Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_A11
(861 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g31610.1 68415.m03862 40S ribosomal protein S3 (RPS3A) 350 8e-97
At5g35530.1 68418.m04226 40S ribosomal protein S3 (RPS3C) 349 1e-96
At3g53870.1 68416.m05951 40S ribosomal protein S3 (RPS3B) riboso... 347 6e-96
At3g06190.2 68416.m00712 speckle-type POZ protein-related simila... 32 0.56
At3g06190.1 68416.m00711 speckle-type POZ protein-related simila... 32 0.56
At3g48010.1 68416.m05234 cyclic nucleotide-regulated ion channel... 31 0.99
At4g30360.1 68417.m04314 cyclic nucleotide-regulated ion channel... 30 1.7
At2g25150.1 68415.m03008 transferase family protein similar to 1... 30 2.3
At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identica... 29 3.0
At5g18570.1 68418.m02195 GTP1/OBG family protein similar to SP|P... 28 7.0
At5g14870.1 68418.m01744 cyclic nucleotide-regulated ion channel... 28 7.0
At3g18850.2 68416.m02394 phospholipid/glycerol acyltransferase f... 28 9.2
At3g18850.1 68416.m02393 phospholipid/glycerol acyltransferase f... 28 9.2
At1g70100.3 68414.m08067 expressed protein 28 9.2
At1g70100.2 68414.m08066 expressed protein 28 9.2
At1g70100.1 68414.m08065 expressed protein 28 9.2
At1g09830.1 68414.m01105 phosphoribosylamine--glycine ligase (PU... 28 9.2
>At2g31610.1 68415.m03862 40S ribosomal protein S3 (RPS3A)
Length = 250
Score = 350 bits (860), Expect = 8e-97
Identities = 171/225 (76%), Positives = 190/225 (84%)
Frame = +1
Query: 103 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 282
ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEKGR
Sbjct: 5 ISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGR 64
Query: 283 RIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 462
RIRELTS+VQKRF P SVELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACYGVLR
Sbjct: 65 RIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
Query: 463 FIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGI 642
F+MESGA+GCEV+VSGKLR RAKSMKF DG M+ SG P +Y++ A RHVLLRQGVLGI
Sbjct: 125 FVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQGVLGI 184
Query: 643 KVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLRADQRSALP 777
KVKIML WD GK+GPK P PD +++ PKD+ V A ++A P
Sbjct: 185 KVKIMLDWDPTGKSGPKTPLPDVVIIHAPKDD-VVYSAPAQAAAP 228
>At5g35530.1 68418.m04226 40S ribosomal protein S3 (RPS3C)
Length = 248
Score = 349 bits (859), Expect = 1e-96
Identities = 166/214 (77%), Positives = 186/214 (86%)
Frame = +1
Query: 103 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 282
ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEKGR
Sbjct: 5 ISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGR 64
Query: 283 RIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 462
RIRELTS+VQKRF P+ SVELYAEKVA RGLCAIAQAESLRYKL+GGLAVRRACYGVLR
Sbjct: 65 RIRELTSLVQKRFKFPQDSVELYAEKVANRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
Query: 463 FIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGI 642
F+MESGA+GCEV+VSGKLR RAKSMKF DG M+ SG P +Y++ A RHVLLRQGVLG+
Sbjct: 125 FVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQGVLGL 184
Query: 643 KVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPV 744
KVKIML WD +GK GP P PD +++ PK++ V
Sbjct: 185 KVKIMLDWDPKGKQGPMTPLPDVVIIHTPKEDDV 218
>At3g53870.1 68416.m05951 40S ribosomal protein S3 (RPS3B) ribosomal
protein S3a - Xenopus laevis, PIR:R3XL3A
Length = 249
Score = 347 bits (853), Expect = 6e-96
Identities = 169/227 (74%), Positives = 191/227 (84%)
Frame = +1
Query: 103 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 282
ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEKGR
Sbjct: 5 ISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGR 64
Query: 283 RIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 462
RIRELTS+VQKRF P SVELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACYGVLR
Sbjct: 65 RIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
Query: 463 FIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGI 642
F+MESGA+GCEV+VSGKLR RAKSMKF DG M+ SG P +Y+++A RHVLLRQGVLGI
Sbjct: 125 FVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDSAVRHVLLRQGVLGI 184
Query: 643 KVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLRADQRSALPRA 783
KVK+ML WD +G +GPK P PD +++ PK+E + A + A P A
Sbjct: 185 KVKVMLDWDPKGISGPKTPLPDVVIIHSPKEEEA-IYAPAQVAAPAA 230
>At3g06190.2 68416.m00712 speckle-type POZ protein-related similar
to SPOP (novel nuclear speckle-type protein)
(SP:O43791) [Homo sapiens]; contains Pfam PF00651 :
BTB/POZ domain; contains Pfam PF00917: MATH domain
Length = 295
Score = 31.9 bits (69), Expect = 0.56
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -1
Query: 300 SQLTDSASFLSEHTLCPGGHNNDLRADGSD 211
S+L + + LSEH+L GH +L ADG D
Sbjct: 255 SELLEYVARLSEHSLTSSGHRKELFADGCD 284
>At3g06190.1 68416.m00711 speckle-type POZ protein-related similar
to SPOP (novel nuclear speckle-type protein)
(SP:O43791) [Homo sapiens]; contains Pfam PF00651 :
BTB/POZ domain; contains Pfam PF00917: MATH domain
Length = 406
Score = 31.9 bits (69), Expect = 0.56
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -1
Query: 300 SQLTDSASFLSEHTLCPGGHNNDLRADGSD 211
S+L + + LSEH+L GH +L ADG D
Sbjct: 366 SELLEYVARLSEHSLTSSGHRKELFADGCD 395
>At3g48010.1 68416.m05234 cyclic nucleotide-regulated ion channel,
putative (CNGC16) similar to cyclic nucleotide and
calmodulin-regulated ion channel (cngc6) GI:4581207 from
[Arabidopsis thaliana]
Length = 705
Score = 31.1 bits (67), Expect = 0.99
Identities = 19/48 (39%), Positives = 24/48 (50%)
Frame = -1
Query: 399 FGLGDSAKTTSSHLFSIQFYRLLWNVESLLYYGSQLTDSASFLSEHTL 256
FG + TSS F FY L W + +L YG L +AS LS T+
Sbjct: 309 FGDAFTNDVTSSPFFDKYFYCLWWGLRNLSSYGQSL--AASTLSSETI 354
>At4g30360.1 68417.m04314 cyclic nucleotide-regulated ion channel,
putative (CNGC17) similar to cyclic nucleotide and
calmodulin-regulated ion channel cngc5 GI:4581205 from
[Arabidopsis thaliana]
Length = 720
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -1
Query: 399 FGLGDSAKTTSSHLFSIQFYRLLWNVESLLYYGSQLTDSASFLSEHT 259
FG + SS F FY L W ++ L YG L+ + F+ E T
Sbjct: 333 FGNAITKNVVSSQFFERYFYCLWWGLQQLSSYGQNLS-TTMFMGETT 378
>At2g25150.1 68415.m03008 transferase family protein similar to
10-deacetylbaccatin III-10-O-acetyl transferase
[gi:6746554], 2-debenzoyl-7,13-diacetylbaccatin
III-2-O-benzoyl transferase [gi:11559716] from Taxus
cuspidata; contains Pfam transferase family domain
PF00248; contains EST gb:R65039
Length = 461
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -1
Query: 231 LRADGSDPHFHAGVAVLGQLPSEELIEFRLE 139
L+ SDP GV V+ +LP + ++EF+ E
Sbjct: 418 LKPSKSDPSMEGGVKVIMKLPRDAMVEFKRE 448
>At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identical
to gi_3883128_gb_AAC77827
Length = 133
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = +3
Query: 660 AVGPARQERPEEATTRPHPGDRAQGRARAPSSRPAKCAPS 779
A GPA P AT P RA A +PS+ P AP+
Sbjct: 23 APGPAPTISPLPATPTPSQSPRATAPAPSPSANPPPSAPT 62
>At5g18570.1 68418.m02195 GTP1/OBG family protein similar to
SP|P20964 Spo0B-associated GTP-binding protein {Bacillus
subtilis}; contains Pfam profile PF01018: GTP1/OBG
family
Length = 681
Score = 28.3 bits (60), Expect = 7.0
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Frame = +1
Query: 436 RRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDG--LMIHSGDPCNDYVNTATR 609
RRA +SG R VV +G R + + +++D H D C VN + +
Sbjct: 578 RRAAINEFEVFRDSGTRAWHVVGAGLQRFVQMTNWRYMDSDKRFQHVLDACG--VNKSLK 635
Query: 610 HVLLRQGVLGIKVKIMLPWDQQGKNGPKKP 699
++ +++G I ++ L W NG +P
Sbjct: 636 NMGVKEGDTVIVGEMELIW-HDSANGSSRP 664
>At5g14870.1 68418.m01744 cyclic nucleotide-regulated ion channel,
putative (CNGC18) similar to cyclic nucleotide and
calmodulin-regulated ion channel (cngc6) GI:4581207 from
[Arabidopsis thaliana]
Length = 706
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Frame = -1
Query: 459 ENTIASTTYSETSDKLVS*RFGLGDSAKTT---SSHLFSIQFYRLLWNVESLLYYGSQLT 289
+N ++ + + + +FG+ A TT ++ S Y L W + +L YG +T
Sbjct: 278 QNVTQVLSHCDATSSTTNFKFGMFAEAFTTQVATTDFVSKYLYCLWWGLRNLSSYGQNIT 337
Query: 288 DSASFLSEHTLC 253
S +L E C
Sbjct: 338 TSV-YLGETLFC 348
>At3g18850.2 68416.m02394 phospholipid/glycerol acyltransferase
family protein contains Pfam profile: PF01553
Acyltransferase
Length = 375
Score = 27.9 bits (59), Expect = 9.2
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Frame = -1
Query: 261 TLCPGGHNNDLRADGSDPHFHAGVAVLGQLPSEEL-IEFRLENPISNKFSLL*NIV-HGH 88
T CP +N + S+ H H L Q+P++E I L N K LL + +GH
Sbjct: 238 TRCPSFLDNVYGIEPSEVHIHIRRINLTQIPNQEKDINAWLMNTFQLKDQLLNDFYSNGH 297
Query: 87 DCNGSREKE 61
N EKE
Sbjct: 298 FPNEGTEKE 306
>At3g18850.1 68416.m02393 phospholipid/glycerol acyltransferase
family protein contains Pfam profile: PF01553
Acyltransferase
Length = 375
Score = 27.9 bits (59), Expect = 9.2
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Frame = -1
Query: 261 TLCPGGHNNDLRADGSDPHFHAGVAVLGQLPSEEL-IEFRLENPISNKFSLL*NIV-HGH 88
T CP +N + S+ H H L Q+P++E I L N K LL + +GH
Sbjct: 238 TRCPSFLDNVYGIEPSEVHIHIRRINLTQIPNQEKDINAWLMNTFQLKDQLLNDFYSNGH 297
Query: 87 DCNGSREKE 61
N EKE
Sbjct: 298 FPNEGTEKE 306
>At1g70100.3 68414.m08067 expressed protein
Length = 504
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 721 TEPKDEPVPLRADQRSALPRAXGLCRXRVAAXRLGXKTILXK 846
T PK P+ L DQ + P A R + R+G K I+ +
Sbjct: 333 TAPKSLPISLNVDQSVSDPTAVPTTRKSLIMERMGDKDIVRR 374
>At1g70100.2 68414.m08066 expressed protein
Length = 482
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 721 TEPKDEPVPLRADQRSALPRAXGLCRXRVAAXRLGXKTILXK 846
T PK P+ L DQ + P A R + R+G K I+ +
Sbjct: 333 TAPKSLPISLNVDQSVSDPTAVPTTRKSLIMERMGDKDIVRR 374
>At1g70100.1 68414.m08065 expressed protein
Length = 467
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 721 TEPKDEPVPLRADQRSALPRAXGLCRXRVAAXRLGXKTILXK 846
T PK P+ L DQ + P A R + R+G K I+ +
Sbjct: 333 TAPKSLPISLNVDQSVSDPTAVPTTRKSLIMERMGDKDIVRR 374
>At1g09830.1 68414.m01105 phosphoribosylamine--glycine ligase (PUR2)
Identical to phosphoribosylamine--glycine ligase,
chloroplast [precursor] SP:P52420 from [Arabidopsis
thaliana]
Length = 532
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 478 GARGCEVVVSGKLRGQRAKSMKFVDG 555
G+ GC+VVV L G+ A VDG
Sbjct: 273 GSAGCQVVVEEFLEGEEASFFALVDG 298
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,559,342
Number of Sequences: 28952
Number of extensions: 401157
Number of successful extensions: 1167
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1167
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2009406400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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