Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_A10
(925 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 33 0.043
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 31 0.23
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 29 0.70
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 1.6
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 23 1.8
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 27 2.8
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 33.5 bits (73), Expect = 0.043
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = +3
Query: 549 PPPPGXGGXXFXXPPPPPP 605
PPPPG G PPPPPP
Sbjct: 765 PPPPGVAGAGPPPPPPPPP 783
Score = 32.7 bits (71), Expect = 0.075
Identities = 21/72 (29%), Positives = 23/72 (31%)
Frame = +2
Query: 539 KKXPPPPXGXXXXFXXPPPPPPKKXXXXGGXRGXGVPPPXXGGXWXPPPXGGAPXKKXLX 718
K PPPP P P P G PPP G PPP P +
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP---PPPPPAVS 786
Query: 719 XGPXXXXAPXPR 754
G AP P+
Sbjct: 787 AGGSRYYAPAPQ 798
Score = 29.5 bits (63), Expect = 0.70
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +2
Query: 299 PXXXPPPXGGGXXPPXKKKXXXGGGPPP 382
P P P GG PP G GPPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPP 777
Score = 27.9 bits (59), Expect = 2.1
Identities = 13/43 (30%), Positives = 13/43 (30%)
Frame = +3
Query: 252 PXPPQKXXAPXXXTXXPXXXXPPXGGGXPPPXKKKXXGGGAPP 380
P PP P P GG PPP G PP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPP 776
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 31.1 bits (67), Expect = 0.23
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +2
Query: 548 PPPPXGXXXXFXXPPPPPP 604
PPPP G PPPPPP
Sbjct: 12 PPPPPGFEPPSQPPPPPPP 30
Score = 29.1 bits (62), Expect = 0.93
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +3
Query: 549 PPPPGXGGXXFXXPPPPPP 605
PPPP G PPPPPP
Sbjct: 11 PPPPPPGFEPPSQPPPPPP 29
Score = 26.2 bits (55), Expect = 6.5
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +3
Query: 549 PPPPGXGGXXFXXPPPPPP 605
PPPP G PPPPP
Sbjct: 10 PPPPPPPGFEPPSQPPPPP 28
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 29.5 bits (63), Expect = 0.70
Identities = 16/55 (29%), Positives = 19/55 (34%), Gaps = 3/55 (5%)
Frame = +2
Query: 590 PPPPPKKXXXXGGXRGXGVPPPXXGGXWXPPPXGGA---PXKKXLXXGPXXXXAP 745
PPPPP PPP G + PP G P ++ P AP
Sbjct: 908 PPPPPTASMTASAPAIASPPPPKVGETYHPPTASGTRVPPVQQPSHPNPYTPVAP 962
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.3 bits (60), Expect = 1.6
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -2
Query: 531 KXPPPPPPXXXKKKXXGGAPXXFXGXXGGAXXPXPPP 421
K PPPPPP ++ G P G + P PPP
Sbjct: 309 KRPPPPPP--PSRRNRGKPPIG-NGSSNSSLPPPPPP 342
Score = 27.9 bits (59), Expect = 2.1
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +3
Query: 552 PPPGXGGXXFXXPPPPPPKNXXXXG 626
PP G G PPPPPP G
Sbjct: 325 PPIGNGSSNSSLPPPPPPPRSNAAG 349
Score = 27.5 bits (58), Expect = 2.8
Identities = 15/46 (32%), Positives = 17/46 (36%)
Frame = +2
Query: 548 PPPPXGXXXXFXXPPPPPPKKXXXXGGXRGXGVPPPXXGGXWXPPP 685
PP G PPPPPP+ +P P G PPP
Sbjct: 325 PPIGNGSSNSSLPPPPPPPR------SNAAGSIPLPPQGRSAPPPP 364
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 23.4 bits (48), Expect(2) = 1.8
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +3
Query: 588 PPPPPPKN 611
PPPPPP N
Sbjct: 309 PPPPPPSN 316
Score = 23.0 bits (47), Expect(2) = 1.8
Identities = 9/22 (40%), Positives = 9/22 (40%)
Frame = +3
Query: 540 KXXPPPPGXGGXXFXXPPPPPP 605
K P G PPPPPP
Sbjct: 291 KTQAPSSGDSANGGLPPPPPPP 312
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 27.5 bits (58), Expect = 2.8
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = -1
Query: 607 FGGGGGGXXKXXPPXPGGGGXF 542
FGGG GG PP PGG G F
Sbjct: 193 FGGGSGGP----PPGPGGFGGF 210
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,968,041
Number of Sequences: 5004
Number of extensions: 32793
Number of successful extensions: 260
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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