Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_A09
         (888 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0075 - 27513927-27514220,27514806-27515117,27515203-275153...    29   6.5  
12_02_0237 - 16087083-16087201,16087531-16088341,16097713-16098156     28   8.6  
12_02_0232 - 16015174-16015244,16015861-16016671,16018412-16018861     28   8.6  
01_01_1106 + 8750597-8754031                                           28   8.6  

>05_07_0075 -
           27513927-27514220,27514806-27515117,27515203-27515342,
           27515502-27515565,27515637-27516083,27516169-27516303,
           27517620-27517737,27517857-27517876
          Length = 509

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +2

Query: 581 NNVTTIKYSCDFEEDLCGWIQDEFHDFDWKRLNTKTPSSFTL 706
           NN+    Y   FEED  G+ +DE+ D+D+     ++  +FTL
Sbjct: 126 NNIDDYAYEA-FEEDY-GYDEDEYDDYDYDSTLYESEYNFTL 165


>12_02_0237 - 16087083-16087201,16087531-16088341,16097713-16098156
          Length = 457

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 321 YVTLDINWLGTNTLYVGW 374
           + T DI W+G +TL +GW
Sbjct: 374 FETCDIKWIGQDTLDIGW 391


>12_02_0232 - 16015174-16015244,16015861-16016671,16018412-16018861
          Length = 443

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 321 YVTLDINWLGTNTLYVGW 374
           + T DI W+G +TL +GW
Sbjct: 376 FETCDIKWIGQDTLDIGW 393


>01_01_1106 + 8750597-8754031
          Length = 1144

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = -1

Query: 426 NLGQPDLTQTGSCSSQRPIRHIEYLFPTNL-YL-GLHT 319
           NL   DL+   +CS   P+RHI YL   +L Y+ G+H+
Sbjct: 872 NLVSLDLSNIPNCSCLPPLRHIPYLQSLHLRYMAGVHS 909


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,584,640
Number of Sequences: 37544
Number of extensions: 462843
Number of successful extensions: 1154
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1154
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)