Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_A07
(881 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23H4.06 |gln1||glutamate-ammonia ligase Gln1|Schizosaccharom... 99 7e-22
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar... 29 0.88
SPAC1805.07c |dad2|hos2|DASH complex subunit Dad2|Schizosaccharo... 29 1.2
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha... 27 3.5
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb... 27 4.7
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom... 27 4.7
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 26 6.2
SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|... 26 8.2
>SPAC23H4.06 |gln1||glutamate-ammonia ligase
Gln1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 359
Score = 99.1 bits (236), Expect = 7e-22
Identities = 51/91 (56%), Positives = 64/91 (70%), Gaps = 1/91 (1%)
Frame = +2
Query: 272 VLSKT-LLSRYNDLPLPADKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGS 448
+LSK +L++Y DLP K++A YIWIDG HLR K TL+ P + L +WNFDGS
Sbjct: 9 LLSKAAILNKYADLPQNG-KVMAEYIWIDGFN-HLRSKTMTLDAKPSSIDQLRVWNFDGS 66
Query: 449 STNQADGHNSDTYLVPRAIYKDPFRRGNHIL 541
ST QA G+NSDT L P A+Y DPFRRG++IL
Sbjct: 67 STGQAPGNNSDTLLKPVAMYNDPFRRGDNIL 97
Score = 50.8 bits (116), Expect = 3e-07
Identities = 24/53 (45%), Positives = 29/53 (54%)
Frame = +1
Query: 691 PSGGPRVGFPPPQGPYYCXVGANKVFARDLGRSPLSMLSLCWRTDCRYNAEVM 849
P G P+ GFP PQGP+YC VG +VFARD+ + NAEVM
Sbjct: 147 PFGWPKGGFPGPQGPFYCGVGTGRVFARDIVEAHYKACLYAGINISGINAEVM 199
Score = 41.9 bits (94), Expect = 1e-04
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = +3
Query: 558 YKYNMEPTESNNRISCQEAYDKCKDDEPWFGIEQEYILLD 677
Y + P N+R +C + +K D E WFGIEQEY +LD
Sbjct: 103 YTADGSPNGFNHRDACAKLLEKHADKETWFGIEQEYTMLD 142
>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 524
Score = 29.1 bits (62), Expect = 0.88
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -2
Query: 394 QGAIFAPQVFARAVDPNVGGENLVSRQWKIIVSTQ 290
Q IF AR +VGG + SR WKI+ +Q
Sbjct: 292 QDVIFGVDALARERCVSVGGRDRTSRLWKIVEESQ 326
>SPAC1805.07c |dad2|hos2|DASH complex subunit
Dad2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 94
Score = 28.7 bits (61), Expect = 1.2
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Frame = +1
Query: 505 LQGSIPSR-KSHPRLCVIRINTT-WSQQRATIASVVKKLTTNARMMSPGLG*NRNIFYWI 678
LQ I + K + +C +R ++ QQ T+A+ ++ LT + ++ L +IF I
Sbjct: 2 LQARIEEKQKEYELICKLRDSSNDMVQQIETLAAKLETLTDGSEAVATVLNNWPSIFESI 61
Query: 679 QICAPSGGPRVGFPP 723
QI + G V PP
Sbjct: 62 QIASQHSGALVRIPP 76
>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 697
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 206 HTKIEDNPKILSGPVLTNSPNAVLSKTLLSRYNDLPLPA 322
H KIE+N + +S P ++ S L L + + LPA
Sbjct: 116 HDKIEENKRPISQPQVSASEKVTLKDLSLEPHQPVSLPA 154
>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 224
Score = 26.6 bits (56), Expect = 4.7
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 691 PSGGPRVGFPPPQGPYYCXVGANKVFARDLGR 786
PSG PR+ +P P G Y C N + +D GR
Sbjct: 127 PSGRPRISYPYPPG-YMCYKCHNTGY-KDSGR 156
>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 447
Score = 26.6 bits (56), Expect = 4.7
Identities = 17/69 (24%), Positives = 32/69 (46%)
Frame = +2
Query: 215 IEDNPKILSGPVLTNSPNAVLSKTLLSRYNDLPLPADKILATYIWIDGSGEHLRCKDRTL 394
++DN + S +S N+ LS + + +P+PA + T + D + R T
Sbjct: 295 LQDNASLTSQGSNLSSQNSGLSSSSSGIFGRMPIPAQSLDTTMLRTDSNSNIRRA---TT 351
Query: 395 NFIPKAPKD 421
+FI + K+
Sbjct: 352 SFIANSEKE 360
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 26.2 bits (55), Expect = 6.2
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +2
Query: 650 DRTGIYFTGFRSAPLRVXPGLVSPHRKGHTTAVSVP 757
DR+G+Y + P + P ++ P R T V +P
Sbjct: 625 DRSGVYVIAATNRPDIIDPAMLRPGRLDKTLLVDLP 660
>SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 348
Score = 25.8 bits (54), Expect = 8.2
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +2
Query: 446 SSTNQADGHNSDTYLVPRAI 505
+ T +G NSDTY++PR +
Sbjct: 219 TETRILNGKNSDTYIIPRPL 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,788,358
Number of Sequences: 5004
Number of extensions: 83805
Number of successful extensions: 230
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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