Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_A07
(881 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1445 - 33658355-33658417,33658536-33658669,33659056-336591... 94 2e-19
02_05_0661 - 30693701-30693853,30694037-30694196,30694290-306943... 93 2e-19
03_02_0210 - 6425708-6425863,6425955-6426114,6426204-6426295,642... 89 6e-18
03_05_0899 - 28619081-28619208,28619309-28619369,28619936-286200... 65 6e-11
01_05_0006 + 17008799-17009417,17010035-17010162,17010425-170106... 29 4.9
01_01_0307 + 2513678-2513772,2514064-2514682 29 4.9
>04_04_1445 - 33658355-33658417,33658536-33658669,33659056-33659116,
33659197-33659356,33660032-33660081,33662237-33662290,
33662630-33662704,33662821-33662949,33663065-33663152,
33663266-33663372,33663513-33663561,33663657-33663760,
33663941-33663980,33664409-33664659,33664674-33664686,
33665846-33666355,33666437-33667657,33667973-33668221,
33668305-33668531
Length = 1194
Score = 93.9 bits (223), Expect = 2e-19
Identities = 46/98 (46%), Positives = 61/98 (62%)
Frame = +2
Query: 248 VLTNSPNAVLSKTLLSRYNDLPLPADKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLP 427
V T + V L + P DKI+A YIW+ G+G LR K RT++ + P +LP
Sbjct: 792 VSTETTGVVTRMEQLLNMDTTPF-TDKIIAEYIWVGGTGIDLRSKSRTISKPVEDPSELP 850
Query: 428 IWNFDGSSTNQADGHNSDTYLVPRAIYKDPFRRGNHIL 541
WN+DGSST QA G +S+ L P+AI+KDPFR GN+IL
Sbjct: 851 KWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNIL 888
Score = 46.4 bits (105), Expect = 3e-05
Identities = 18/30 (60%), Positives = 22/30 (73%)
Frame = +1
Query: 691 PSGGPRVGFPPPQGPYYCXVGANKVFARDL 780
P G P G+P PQGPYYC VG++K F RD+
Sbjct: 941 PLGWPVGGYPGPQGPYYCAVGSDKSFGRDI 970
Score = 44.8 bits (101), Expect = 9e-05
Identities = 22/49 (44%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +3
Query: 546 MCDTYKYNMEPTESNNRISCQEAYD--KCKDDEPWFGIEQEYILLDSDL 686
MCDTY EP +N R + + K PWFGIEQEY LL D+
Sbjct: 890 MCDTYTPAGEPIPTNKRNRAAQVFSDPKVVSQVPWFGIEQEYTLLQRDV 938
Score = 34.7 bits (76), Expect = 0.099
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +2
Query: 761 KSLPETLVEAHYRCCLYAGVPIAGT 835
KS + +AHY+ CLYAG+ I+GT
Sbjct: 964 KSFGRDISDAHYKACLYAGINISGT 988
>02_05_0661 -
30693701-30693853,30694037-30694196,30694290-30694381,
30694469-30694543,30694671-30694799,30694916-30695003,
30695118-30695224,30695645-30695693,30695802-30695905,
30696108-30696147,30696838-30696911
Length = 356
Score = 93.5 bits (222), Expect = 2e-19
Identities = 43/73 (58%), Positives = 53/73 (72%)
Frame = +2
Query: 323 DKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSSTNQADGHNSDTYLVPRA 502
+KI+A YIWI GSG LR K RTL+ P LP WN+DGSST QA G +S+ L P+A
Sbjct: 17 EKIIAEYIWIGGSGMDLRSKARTLSGPVTDPSKLPKWNYDGSSTGQAPGEDSEVILYPQA 76
Query: 503 IYKDPFRRGNHIL 541
I+KDPFR+GN+IL
Sbjct: 77 IFKDPFRKGNNIL 89
Score = 48.4 bits (110), Expect = 8e-06
Identities = 19/30 (63%), Positives = 22/30 (73%)
Frame = +1
Query: 691 PSGGPRVGFPPPQGPYYCXVGANKVFARDL 780
P G P GFP PQGPYYC +GA+K F RD+
Sbjct: 142 PLGWPVGGFPGPQGPYYCGIGADKSFGRDI 171
Score = 45.2 bits (102), Expect = 7e-05
Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
Frame = +3
Query: 408 KLPKICLYGTSMAAQPTKLMGTILIPTSYLVLFTRIHSVEEITSSXMCDTYKYNMEPTES 587
KLPK G+S P + IL P + + I MCD Y EP +
Sbjct: 49 KLPKWNYDGSSTGQAPGEDSEVILYPQA--IFKDPFRKGNNIL--VMCDCYTPAGEPIPT 104
Query: 588 NNRISCQEAYD--KCKDDEPWFGIEQEYILLDSDL 686
N R + + + + +EPW+GIEQEY LL D+
Sbjct: 105 NKRHNAAKIFSSPEVASEEPWYGIEQEYTLLQKDI 139
Score = 33.9 bits (74), Expect = 0.17
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +2
Query: 761 KSLPETLVEAHYRCCLYAGVPIAG 832
KS +V++HY+ CLYAG+ I+G
Sbjct: 165 KSFGRDIVDSHYKACLYAGINISG 188
>03_02_0210 -
6425708-6425863,6425955-6426114,6426204-6426295,
6426490-6426564,6426701-6426829,6427312-6427375,
6427761-6427867,6428795-6428843,6428955-6429058,
6429166-6429205,6429492-6429565
Length = 349
Score = 88.6 bits (210), Expect = 6e-18
Identities = 41/74 (55%), Positives = 52/74 (70%)
Frame = +2
Query: 320 ADKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSSTNQADGHNSDTYLVPR 499
+DKI+A YIW+ GSG LR K RT+ LP WN+DGSST QA G +S+ L P+
Sbjct: 16 SDKIIAEYIWVGGSGIDLRSKARTVKGPITDVSQLPKWNYDGSSTGQAPGEDSEVILYPQ 75
Query: 500 AIYKDPFRRGNHIL 541
AI+KDPFRRG++IL
Sbjct: 76 AIFKDPFRRGDNIL 89
Score = 41.1 bits (92), Expect = 0.001
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +3
Query: 546 MCDTYKYNMEPTESNNRISCQEAYDK--CKDDEPWFGIEQEYILLDSDL 686
MCD Y EP +N R S + + + PW+GIEQEY LL D+
Sbjct: 91 MCDCYTPQGEPIPTNKRHSAAKIFSHPDVVAEVPWYGIEQEYTLLQKDV 139
Score = 33.1 bits (72), Expect = 0.30
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +2
Query: 761 KSLPETLVEAHYRCCLYAGVPIAG 832
K+ +V+AHY+ C+YAG+ I+G
Sbjct: 157 KAFGRDIVDAHYKACIYAGINISG 180
Score = 31.9 bits (69), Expect = 0.70
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +1
Query: 730 GPYYCXVGANKVFARDL 780
GPYYC GA K F RD+
Sbjct: 147 GPYYCAAGAEKAFGRDI 163
>03_05_0899 -
28619081-28619208,28619309-28619369,28619936-28620095,
28620200-28620237,28620341-28620394,28620562-28620636,
28620744-28620872,28621172-28621259,28621340-28621446,
28621547-28621595,28621683-28621786,28622019-28622133,
28622517-28622596
Length = 395
Score = 65.3 bits (152), Expect = 6e-11
Identities = 30/58 (51%), Positives = 40/58 (68%)
Frame = +2
Query: 368 HLRCKDRTLNFIPKAPKDLPIWNFDGSSTNQADGHNSDTYLVPRAIYKDPFRRGNHIL 541
HL+ + TL+ P LP WNFDGSST QA G +S+ L P+AI++DPFR+G +IL
Sbjct: 59 HLKEVNHTLSGPVDDPSKLPKWNFDGSSTGQATGDDSEVILHPQAIFRDPFRKGKNIL 116
Score = 48.4 bits (110), Expect = 8e-06
Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = +3
Query: 546 MCDTYKYNMEPTESNNRISCQEAYDK--CKDDEPWFGIEQEYILLDSDL 686
MCD Y N EP +NNR + + K +EPW+GIEQEY LL +
Sbjct: 118 MCDCYAPNGEPIPTNNRYNAARIFSHPDVKAEEPWYGIEQEYTLLQKHI 166
Score = 45.6 bits (103), Expect = 5e-05
Identities = 22/53 (41%), Positives = 27/53 (50%)
Frame = +1
Query: 691 PSGGPRVGFPPPQGPYYCXVGANKVFARDLGRSPLSMLSLCWRTDCRYNAEVM 849
P G P G+P PQGPYYC GA+K + RD+ + NAEVM
Sbjct: 169 PLGWPLGGYPGPQGPYYCAAGADKSYGRDIVDAHYKACLFAGINISGINAEVM 221
>01_05_0006 +
17008799-17009417,17010035-17010162,17010425-17010650,
17010792-17010925,17010988-17011161,17011234-17012238
Length = 761
Score = 29.1 bits (62), Expect = 4.9
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -3
Query: 336 ARILSAGSGRSLYRLSSVLDSTAFGELVKTGPDR 235
AR L +LY SS+LD + GEL++ PDR
Sbjct: 553 ARDLDPSQTSTLYCQSSLLDKSENGELIEMYPDR 586
>01_01_0307 + 2513678-2513772,2514064-2514682
Length = 237
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = -2
Query: 217 YFGMRCISHFETGKAR--LCLEMFPRCEC*ILRENV 116
Y CISHF KAR LC E +P C I+ + V
Sbjct: 195 YRTQNCISHFLANKARAKLCTEFWPDETCNIISQFV 230
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,800,824
Number of Sequences: 37544
Number of extensions: 606701
Number of successful extensions: 1660
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1656
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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