Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_A07
         (881 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50671| Best HMM Match : No HMM Matches (HMM E-Value=.)             112   4e-25
SB_16495| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_7865| Best HMM Match : Mucin (HMM E-Value=1.2)                      29   5.0  
SB_4830| Best HMM Match : Rad10 (HMM E-Value=9.7)                      29   5.0  
SB_50203| Best HMM Match : DUF371 (HMM E-Value=5.8)                    29   6.6  
SB_27884| Best HMM Match : Pox_A32 (HMM E-Value=0.61)                  28   8.7  
SB_22450| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  

>SB_50671| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 403

 Score =  112 bits (269), Expect = 4e-25
 Identities = 52/85 (61%), Positives = 64/85 (75%)
 Frame = +2

Query: 287 LLSRYNDLPLPADKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSSTNQAD 466
           +L +Y  L    D++ A YIW+DGSGE +RCK RTL+  PK+ +DLPIWNFDGSST QA+
Sbjct: 14  VLEKYQRLD-QGDRVQALYIWVDGSGEGIRCKSRTLDKPPKSHEDLPIWNFDGSSTAQAE 72

Query: 467 GHNSDTYLVPRAIYKDPFRRGNHIL 541
           G NSD YL P  I+KDPFR GN+IL
Sbjct: 73  GCNSDVYLHPINIFKDPFRGGNNIL 97



 Score = 55.2 bits (127), Expect = 7e-08
 Identities = 23/48 (47%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
 Frame = +3

Query: 546 MCDTYKYNMEPTESNNRISCQEAYD--KCKDDEPWFGIEQEYILLDSD 683
           +C+TY+++ +PT +N R +C +  +  K K   PWFGIEQEY LLD D
Sbjct: 99  LCETYQFDHKPTRTNKRKTCFDVMESEKVKPHRPWFGIEQEYTLLDID 146



 Score = 52.0 bits (119), Expect = 6e-07
 Identities = 20/30 (66%), Positives = 23/30 (76%)
 Frame = +1

Query: 691 PSGGPRVGFPPPQGPYYCXVGANKVFARDL 780
           P G P+ GFP PQGPYYC VG NKVF R++
Sbjct: 149 PLGWPKGGFPGPQGPYYCGVGTNKVFGREI 178



 Score = 39.1 bits (87), Expect = 0.005
 Identities = 16/19 (84%), Positives = 17/19 (89%)
 Frame = +2

Query: 779 LVEAHYRCCLYAGVPIAGT 835
           +VEAHYR CLYAGV IAGT
Sbjct: 178 IVEAHYRACLYAGVKIAGT 196


>SB_16495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 851

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 17/49 (34%), Positives = 21/49 (42%)
 Frame = +3

Query: 48  ESISRPPREAIETFYAPTKPFVNTFSRNIQHSHRGNISRHNRALPVSKW 194
           E  S PP  A E F    +P V T +  I HS    + +  R  P  KW
Sbjct: 655 EERSIPPMRAFEQFLVRKRPAVGTANYQIHHSAEDMLQKRRRLCP--KW 701


>SB_7865| Best HMM Match : Mucin (HMM E-Value=1.2)
          Length = 2527

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -1

Query: 281  WTALRSGSWLKPAPIESSDYLLFWYALYQPF 189
            W     GSWL+  P+    +LLF Y   Q F
Sbjct: 1880 WEDTEEGSWLREYPVTLIQFLLFLYNNVQQF 1910


>SB_4830| Best HMM Match : Rad10 (HMM E-Value=9.7)
          Length = 231

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 114 NTFSRNIQHSHRGNISRHNRAL 179
           NT +  IQHS+ G +  HN AL
Sbjct: 110 NTITDRIQHSNMGEVDNHNHAL 131


>SB_50203| Best HMM Match : DUF371 (HMM E-Value=5.8)
          Length = 349

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 570 MEPTESNNRISCQEAYDKCKDDEPWF 647
           + P ++N  +S Q   ++C D EPWF
Sbjct: 159 LTPEKANIMLSSQTYKEECTDTEPWF 184


>SB_27884| Best HMM Match : Pox_A32 (HMM E-Value=0.61)
          Length = 1226

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 2/96 (2%)
 Frame = +1

Query: 544 LCVIRINTTWSQQRATIASVVKKLTTNARMMSPGLG*NRNIFYWIQICAPSGGPRVGFPP 723
           L  +R   +W +    + S +  L+    + S      R++F W+   A +GGP+     
Sbjct: 525 LSSLRSRASWRRLSDVLGSSIVSLSAATTLCSSW---TRSVFSWMTASASAGGPKAIGRR 581

Query: 724 PQGPYYCXVG--ANKVFARDLGRSPLSMLSLCWRTD 825
               +   V   AN     ++GR+ +S L + +  D
Sbjct: 582 HARAWLLEVSGHANNTVVNNVGRNLVSRLKITFAGD 617


>SB_22450| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2806

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 69   REAIETFYAPTKPFVNTFSRNIQHSHRG 152
            R+A+E      KP++N F+R+ Q S+ G
Sbjct: 2154 RDAVENGQVDLKPYLNCFTRHNQKSYHG 2181


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,224,622
Number of Sequences: 59808
Number of extensions: 674949
Number of successful extensions: 1686
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1684
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2514529411
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)