Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_A07
         (881 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    24   2.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   2.1  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.8  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   4.9  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 10/38 (26%), Positives = 16/38 (42%)
 Frame = -3

Query: 768 KDFVGTDTAVVWPLRWGETNPGXTRRGADLNPVKYIPV 655
           +D +G      W + W  T P         N +K++PV
Sbjct: 480 RDMIGYYPCCWWKICWTITTPAICVGVFTFNIIKFVPV 517


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 10/38 (26%), Positives = 16/38 (42%)
 Frame = -3

Query: 768 KDFVGTDTAVVWPLRWGETNPGXTRRGADLNPVKYIPV 655
           +D +G      W + W  T P         N +K++PV
Sbjct: 533 RDMIGYYPCCWWKICWTITTPAICVGVFTFNIIKFVPV 570


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = -3

Query: 153 SLDASVEYCAKTYLRKVLS 97
           ++D + ++C KT +RKV+S
Sbjct: 195 NIDGAEDHCNKTAVRKVIS 213


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 375 GAKIAP*ISYLKLPKICLYGTSM 443
           GA +A  +  LK+P+ CL+G S+
Sbjct: 524 GAVVAGIVG-LKMPRYCLFGDSV 545


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 260,173
Number of Sequences: 438
Number of extensions: 6137
Number of successful extensions: 18
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)