Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_A07
(881 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g35630.1 68418.m04253 glutamine synthetase (GS2) identical to... 95 7e-20
At5g37600.1 68418.m04529 glutamine synthetase, putative similar ... 94 1e-19
At5g16570.1 68418.m01939 glutamine synthetase, putative similar ... 93 2e-19
At1g66200.1 68414.m07514 glutamine synthetase, putative similar ... 93 2e-19
At3g17820.1 68416.m02272 glutamine synthetase (GS1) identical to... 90 2e-18
At1g48470.1 68414.m05418 glutamine synthetase, putative similar ... 90 2e-18
At5g37030.1 68418.m04441 tRNA-splicing endonuclease positive eff... 29 3.1
At3g21430.1 68416.m02704 expressed protein 29 3.1
At5g57130.1 68418.m07135 expressed protein 29 4.1
At3g15370.1 68416.m01949 expansin, putative (EXP12) similar to e... 29 5.4
At2g41590.1 68415.m05139 expressed protein similar to zinc finge... 29 5.4
At4g11540.1 68417.m01851 DC1 domain-containing protein contains ... 28 7.2
At4g32880.1 68417.m04679 homeobox-leucine zipper transcription f... 28 9.5
>At5g35630.1 68418.m04253 glutamine synthetase (GS2) identical to
glutamine synthetase, chloroplast precursor (glutamate--
ammonia ligase, GS2) [Arabidopsis thaliana]
SWISS-PROT:Q43127
Length = 430
Score = 94.7 bits (225), Expect = 7e-20
Identities = 49/111 (44%), Positives = 68/111 (61%), Gaps = 1/111 (0%)
Frame = +2
Query: 212 KIEDNPKILSGPVLT-NSPNAVLSKTLLSRYNDLPLPADKILATYIWIDGSGEHLRCKDR 388
K + N K+ VL S N+ +++ D +D+I+A YIWI GSG LR K R
Sbjct: 37 KKQSNNKVRGFRVLALQSDNSTVNRVETLLNLDTKPYSDRIIAEYIWIGGSGIDLRSKSR 96
Query: 389 TLNFIPKAPKDLPIWNFDGSSTNQADGHNSDTYLVPRAIYKDPFRRGNHIL 541
T+ + P +LP WN+DGSST QA G +S+ L P+AI++DPFR GN+IL
Sbjct: 97 TIEKPVEDPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFRDPFRGGNNIL 147
Score = 46.4 bits (105), Expect = 3e-05
Identities = 18/30 (60%), Positives = 22/30 (73%)
Frame = +1
Query: 691 PSGGPRVGFPPPQGPYYCXVGANKVFARDL 780
P G P FP PQGPYYC VGA+K++ RD+
Sbjct: 200 PLGWPVGAFPGPQGPYYCGVGADKIWGRDI 229
Score = 43.6 bits (98), Expect = 2e-04
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +3
Query: 546 MCDTYKYNMEPTESNNRISCQEAYD--KCKDDEPWFGIEQEYILLDSDLR 689
+CDT+ EP +N R E + K + PWFGIEQEY LL +++
Sbjct: 149 ICDTWTPAGEPIPTNKRAKAAEIFSNKKVSGEVPWFGIEQEYTLLQQNVK 198
Score = 32.3 bits (70), Expect = 0.44
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = +2
Query: 785 EAHYRCCLYAGVPIAGT 835
+AHY+ CLYAG+ I+GT
Sbjct: 231 DAHYKACLYAGINISGT 247
>At5g37600.1 68418.m04529 glutamine synthetase, putative similar to
glutamine synthetase, cytosolic isozyme (Glutamate--
ammonia ligase, GS1) [Lotus japonicus] SWISS-PROT:Q42899
Length = 356
Score = 94.3 bits (224), Expect = 1e-19
Identities = 43/73 (58%), Positives = 52/73 (71%)
Frame = +2
Query: 323 DKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSSTNQADGHNSDTYLVPRA 502
DKI+A YIW+ GSG +R K RTL P LP WN+DGSST QA G +S+ L P+A
Sbjct: 17 DKIIAEYIWVGGSGMDMRSKARTLPGPVTDPSQLPKWNYDGSSTGQAPGEDSEVILYPQA 76
Query: 503 IYKDPFRRGNHIL 541
I+KDPFRRGN+IL
Sbjct: 77 IFKDPFRRGNNIL 89
Score = 46.8 bits (106), Expect = 2e-05
Identities = 18/30 (60%), Positives = 22/30 (73%)
Frame = +1
Query: 691 PSGGPRVGFPPPQGPYYCXVGANKVFARDL 780
P G P G+P PQGPYYC +GA+K F RD+
Sbjct: 142 PVGWPIGGYPGPQGPYYCGIGADKSFGRDV 171
Score = 41.9 bits (94), Expect = 5e-04
Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 3/97 (3%)
Frame = +3
Query: 408 KLPKICLYGTSMAAQPTKLMGTILIPTS-YLVLFTRIHSVEEITSSXMCDTYKYNMEPTE 584
+LPK G+S P + IL P + + F R +++ MCD Y EP
Sbjct: 49 QLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNI-----LVMCDAYTPAGEPIP 103
Query: 585 SNNRISCQEAYDK--CKDDEPWFGIEQEYILLDSDLR 689
+N R + + + + PW+GIEQEY LL D++
Sbjct: 104 TNKRHAAAKVFSNPDVAAEVPWYGIEQEYTLLQKDVK 140
Score = 33.5 bits (73), Expect = 0.19
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +2
Query: 761 KSLPETLVEAHYRCCLYAGVPIAG 832
KS +V++HY+ CLYAG+ I+G
Sbjct: 165 KSFGRDVVDSHYKACLYAGINISG 188
>At5g16570.1 68418.m01939 glutamine synthetase, putative similar to
glutamine synthetase, cytosolic isozyme (glutamate--
ammonia ligase) [Alfalfa] SWISS-PROT:P04078
Length = 356
Score = 93.1 bits (221), Expect = 2e-19
Identities = 44/79 (55%), Positives = 54/79 (68%)
Frame = +2
Query: 305 DLPLPADKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSSTNQADGHNSDT 484
DL D+I+A YIWI GSG +R K RTL P LP WN+DGSST QA G +S+
Sbjct: 11 DLSDSTDQIIAEYIWIGGSGLDMRSKARTLPGPVTDPSQLPKWNYDGSSTGQAPGDDSEV 70
Query: 485 YLVPRAIYKDPFRRGNHIL 541
+ P+AI+KDPFRRGN+IL
Sbjct: 71 IIYPQAIFKDPFRRGNNIL 89
Score = 49.6 bits (113), Expect = 3e-06
Identities = 20/30 (66%), Positives = 22/30 (73%)
Frame = +1
Query: 691 PSGGPRVGFPPPQGPYYCXVGANKVFARDL 780
P G P GFP PQGPYYC VGA+K F RD+
Sbjct: 142 PVGWPVGGFPGPQGPYYCGVGADKAFGRDI 171
Score = 41.5 bits (93), Expect = 7e-04
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +3
Query: 546 MCDTYKYNMEPTESNNRISCQEAYD--KCKDDEPWFGIEQEYILLDSDLR 689
MCD Y EP +N R + + ++ +E W+GIEQEY LL D++
Sbjct: 91 MCDAYTPAGEPIPTNKRHAAAKIFEDPSVVAEETWYGIEQEYTLLQKDIK 140
Score = 34.3 bits (75), Expect = 0.11
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +2
Query: 761 KSLPETLVEAHYRCCLYAGVPIAGT 835
K+ +V++HY+ CLYAG+ ++GT
Sbjct: 165 KAFGRDIVDSHYKACLYAGINVSGT 189
>At1g66200.1 68414.m07514 glutamine synthetase, putative similar to
glutamine synthetase, cytosolic isozyme (Glutamate--
ammonia ligase, GS1) [Lotus japonicus] SWISS-PROT:Q42899
Length = 356
Score = 93.1 bits (221), Expect = 2e-19
Identities = 43/79 (54%), Positives = 55/79 (69%)
Frame = +2
Query: 305 DLPLPADKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSSTNQADGHNSDT 484
D+ ++KI+A YIW+ GSG +R K RTL P LP WN+DGSST QA G +S+
Sbjct: 11 DISDNSEKIIAEYIWVGGSGMDMRSKARTLPGPVTDPSKLPKWNYDGSSTGQAPGQDSEV 70
Query: 485 YLVPRAIYKDPFRRGNHIL 541
L P+AI+KDPFRRGN+IL
Sbjct: 71 ILYPQAIFKDPFRRGNNIL 89
Score = 48.4 bits (110), Expect = 6e-06
Identities = 19/30 (63%), Positives = 22/30 (73%)
Frame = +1
Query: 691 PSGGPRVGFPPPQGPYYCXVGANKVFARDL 780
P G P GFP PQGPYYC +GA+K F RD+
Sbjct: 142 PLGWPIGGFPGPQGPYYCSIGADKSFGRDI 171
Score = 42.3 bits (95), Expect = 4e-04
Identities = 32/96 (33%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Frame = +3
Query: 408 KLPKICLYGTSMAAQPTKLMGTILIPTS-YLVLFTRIHSVEEITSSXMCDTYKYNMEPTE 584
KLPK G+S P + IL P + + F R +++ MCD Y EP
Sbjct: 49 KLPKWNYDGSSTGQAPGQDSEVILYPQAIFKDPFRRGNNI-----LVMCDAYTPAGEPIP 103
Query: 585 SNNRISCQEAYDKCK--DDEPWFGIEQEYILLDSDL 686
+N R + E + + PW+GIEQEY LL D+
Sbjct: 104 TNKRHAAAEIFANPDVIAEVPWYGIEQEYTLLQKDV 139
Score = 31.1 bits (67), Expect = 1.0
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +2
Query: 761 KSLPETLVEAHYRCCLYAGVPIAG 832
KS +V+AHY+ LYAG+ I+G
Sbjct: 165 KSFGRDIVDAHYKASLYAGINISG 188
>At3g17820.1 68416.m02272 glutamine synthetase (GS1) identical to
glutamine synthetase, cytosolic isozyme (glutamate--
ammonia ligase, GS1) [Arabidopsis thaliana]
SWISS-PROT:Q9LVI8
Length = 354
Score = 90.2 bits (214), Expect = 2e-18
Identities = 42/72 (58%), Positives = 51/72 (70%)
Frame = +2
Query: 326 KILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSSTNQADGHNSDTYLVPRAI 505
KI+A YIWI GSG +R K RTL P LP WN+DGSST QA G +S+ L P+AI
Sbjct: 18 KIIAEYIWIGGSGMDIRSKARTLPGPVTDPSKLPKWNYDGSSTGQAAGEDSEVILYPQAI 77
Query: 506 YKDPFRRGNHIL 541
+KDPFR+GN+IL
Sbjct: 78 FKDPFRKGNNIL 89
Score = 46.0 bits (104), Expect = 3e-05
Identities = 18/30 (60%), Positives = 21/30 (70%)
Frame = +1
Query: 691 PSGGPRVGFPPPQGPYYCXVGANKVFARDL 780
P G P G+P PQGPYYC VGA+K RD+
Sbjct: 142 PIGWPVGGYPGPQGPYYCGVGADKAIGRDI 171
Score = 41.1 bits (92), Expect = 0.001
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +3
Query: 546 MCDTYKYNMEPTESNNRISCQEAYDK--CKDDEPWFGIEQEYILLDSDL 686
MCD Y +P +N R + + + +EPW+GIEQEY L+ D+
Sbjct: 91 MCDAYTPAGDPIPTNKRHNAAKIFSHPDVAKEEPWYGIEQEYTLMQKDV 139
Score = 34.7 bits (76), Expect = 0.083
Identities = 12/24 (50%), Positives = 19/24 (79%)
Frame = +2
Query: 761 KSLPETLVEAHYRCCLYAGVPIAG 832
K++ +V+AHY+ CLYAG+ I+G
Sbjct: 165 KAIGRDIVDAHYKACLYAGIGISG 188
>At1g48470.1 68414.m05418 glutamine synthetase, putative similar to
glutamine synthetase, cytosolic isozyme (glutamate--
ammonia ligase, GS1) [Arabidopsis thaliana]
SWISS-PROT:Q9LVI8
Length = 353
Score = 90.2 bits (214), Expect = 2e-18
Identities = 42/72 (58%), Positives = 52/72 (72%)
Frame = +2
Query: 326 KILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSSTNQADGHNSDTYLVPRAI 505
KI+A YIWI GSG +R K RTL P LP WN+DGSST+QA G +S+ L P+AI
Sbjct: 18 KIIAEYIWIGGSGMDIRSKARTLPGPVSNPTKLPKWNYDGSSTDQAAGDDSEVILYPQAI 77
Query: 506 YKDPFRRGNHIL 541
+KDPFR+GN+IL
Sbjct: 78 FKDPFRKGNNIL 89
Score = 51.2 bits (117), Expect = 9e-07
Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Frame = +3
Query: 546 MCDTYKYNMEPTESNNRISCQEAYD--KCKDDEPWFGIEQEYILLDSDLR 689
MCD Y+ +P +NNR + +D K +EPWFGIEQEY LL D++
Sbjct: 91 MCDAYRPAGDPIPTNNRHKAVKIFDHPNVKAEEPWFGIEQEYTLLKKDVK 140
Score = 50.0 bits (114), Expect = 2e-06
Identities = 20/30 (66%), Positives = 22/30 (73%)
Frame = +1
Query: 691 PSGGPRVGFPPPQGPYYCXVGANKVFARDL 780
P G P GFP PQGPYYC VGA+K F RD+
Sbjct: 142 PLGWPLGGFPGPQGPYYCAVGADKAFGRDI 171
Score = 31.9 bits (69), Expect = 0.58
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 761 KSLPETLVEAHYRCCLYAGVPIAG 832
K+ +V+AHY+ CLY+G+ I G
Sbjct: 165 KAFGRDIVDAHYKACLYSGLSIGG 188
>At5g37030.1 68418.m04441 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 638
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/80 (21%), Positives = 39/80 (48%)
Frame = -3
Query: 300 YRLSSVLDSTAFGELVKTGPDRIFGLSSILVCAVSAILKQVRHDYVLKCSLDASVEYCAK 121
+ + +L+ + + +KT PD+ ++ L C V +L++ R + L S + +K
Sbjct: 16 WSMEDILNKDLYKQKIKTIPDKFSSVNEYLKCFVPHLLEETRTE------LSTSFKSLSK 69
Query: 120 TYLRKVLSERKMFRSPHGAV 61
+L ++ S M + G++
Sbjct: 70 AHLFEISSLETMTKESSGSL 89
>At3g21430.1 68416.m02704 expressed protein
Length = 961
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 3/29 (10%)
Frame = -1
Query: 836 LYRQSVRQHKDSIDSGLR---PRSLAKTL 759
LYR SVR+H D +++G+R P LA+ L
Sbjct: 498 LYRDSVRKHYDELNTGMREGLPMDLARPL 526
>At5g57130.1 68418.m07135 expressed protein
Length = 920
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -2
Query: 772 WQRLCWHRHXSSMALAVGGNQPGXHPKGRRSESSK 668
W R C H + L++ GN P P G ESSK
Sbjct: 454 WNRFCETLHNQTGQLSMMGNYPYGLPYGSSHESSK 488
>At3g15370.1 68416.m01949 expansin, putative (EXP12) similar to
expansin GI:11191999 from [Lycopersicon esculentum];
alpha-expansin gene family, PMID:11641069
Length = 252
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -2
Query: 526 STEWILVNSTRYEVGIRIVPISLVG*AAIEVPYRQIFGSFRYEIQGAIF 380
S WI ++T Y G+ P SL G + PY FG+ + G +F
Sbjct: 24 SNGWIRAHATYY--GVNDSPASLGGACGYDNPYHAGFGAHTAALSGELF 70
>At2g41590.1 68415.m05139 expressed protein similar to zinc finger
protein [Arabidopsis thaliana] GI:976277
Length = 367
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +2
Query: 296 RYNDLPLPADKILATYIWID-GSGEHLRCKDRTLNF 400
R + PL D+ +A Y +D G +H+RC+ + NF
Sbjct: 263 RISHPPLNHDEFVAAYPHLDSGRNDHIRCEGESSNF 298
>At4g11540.1 68417.m01851 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 525
Score = 28.3 bits (60), Expect = 7.2
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = -1
Query: 479 QNCAHQLGWLSCHRSSI*ADLWEL*V*NSRCDLCTSGVRQSRRSKCRWRESCQPAVEDHC 300
Q+ +H+ +L H + + LWE N RC CT VR C+ C + HC
Sbjct: 286 QHFSHKEHYLRFHVNGL---LWEE---NKRCSACTHPVRLQSFYACK---DCDFILHQHC 336
Query: 299 IDS 291
+S
Sbjct: 337 AES 339
>At4g32880.1 68417.m04679 homeobox-leucine zipper transcription
factor (HB-8) identical to HD-zip transcription factor
(athb-8) (GI:7270235) [Arabidopsis thaliana]
Length = 833
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 343 HLDRRLWRTPEVQRSHLEFHT*SSQRSAYMELRW 444
H D W PEV RS E T +QR+ LR+
Sbjct: 332 HFDLEPWSVPEVLRSLYESSTLLAQRTTMAALRY 365
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,156,981
Number of Sequences: 28952
Number of extensions: 460821
Number of successful extensions: 1229
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1225
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2077687200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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