Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_A06
         (881 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59494| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.6  
SB_54086| Best HMM Match : Phage_integrase (HMM E-Value=0.68)          29   6.6  
SB_21579| Best HMM Match : Phage_integrase (HMM E-Value=0.96)          29   6.6  
SB_27444| Best HMM Match : Phage_integrase (HMM E-Value=0.0013)        28   8.7  

>SB_59494| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 182

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +3

Query: 165 K*CVA-FVKQWLFKTINELRNCELLLFCKLRP 257
           K C+  ++K++L +T N   NC+ LL C  +P
Sbjct: 130 KLCIMKYLKEYLLRTENLRNNCKQLLLCHAKP 161


>SB_54086| Best HMM Match : Phage_integrase (HMM E-Value=0.68)
          Length = 282

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +3

Query: 165 K*CVA-FVKQWLFKTINELRNCELLLFCKLRP 257
           K C+  ++K++L +T N   NC+ LL C  +P
Sbjct: 130 KLCIMKYLKEYLLRTENLRNNCKQLLLCHAKP 161


>SB_21579| Best HMM Match : Phage_integrase (HMM E-Value=0.96)
          Length = 290

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +3

Query: 165 K*CVA-FVKQWLFKTINELRNCELLLFCKLRP 257
           K C+  ++K++L +T N   NC+ LL C  +P
Sbjct: 173 KLCIMKYLKEYLLRTENLRNNCKQLLLCHAKP 204


>SB_27444| Best HMM Match : Phage_integrase (HMM E-Value=0.0013)
          Length = 940

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 180 FVKQWLFKTINELRNCELLLFCKLRP 257
           ++K++L +T N   NC+ LL C  +P
Sbjct: 152 YLKEYLLRTENLRNNCKQLLLCHAKP 177


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,473,464
Number of Sequences: 59808
Number of extensions: 236001
Number of successful extensions: 251
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2514529411
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)