Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_A06
         (881 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   8.6  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    22   8.6  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    22   8.6  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    22   8.6  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    22   8.6  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 467 WHNNRDLDKIRYYSLPT 417
           WHN   L  IRY  +P+
Sbjct: 77  WHNKTFLAVIRYNGVPS 93


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -1

Query: 464 HNNRDLDKIRYYSL 423
           HNN +  K++YY++
Sbjct: 313 HNNNNYKKLQYYNI 326


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -1

Query: 464 HNNRDLDKIRYYSL 423
           HNN +  K++YY++
Sbjct: 324 HNNNNYKKLQYYNI 337


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -1

Query: 464 HNNRDLDKIRYYSL 423
           HNN +  K++YY++
Sbjct: 324 HNNNNYKKLQYYNI 337


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -1

Query: 464 HNNRDLDKIRYYSL 423
           HNN +  K++YY++
Sbjct: 313 HNNNNYKKLQYYNI 326


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,499
Number of Sequences: 438
Number of extensions: 2669
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)