Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_A04
         (922 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    36   0.011
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    30   0.40 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   1.2  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 35.5 bits (78), Expect = 0.011
 Identities = 28/114 (24%), Positives = 40/114 (35%)
 Frame = +2

Query: 530 PPEXGXNAGXPXXPGXPQKATNRXKAGXXXXXXRXPPXEEXSQXSXPXSEVEKPXPPIQX 709
           PP  G  +  P  P  P    +   A         PP       +   +  ++P PP   
Sbjct: 258 PPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPPP--- 314

Query: 710 XXXPPREXXXXRPPVXNXPLTGSLSAXFPSXXXAPPPPSXXRXPFXPVRPRGXS 871
              PP      +PP+ N    GS ++  P     PPPP        P+ P+G S
Sbjct: 315 --PPPSRRNRGKPPIGN----GSSNSSLPPP---PPPPRSNAAGSIPLPPQGRS 359



 Score = 29.1 bits (62), Expect = 0.93
 Identities = 15/49 (30%), Positives = 17/49 (34%)
 Frame = -1

Query: 505 SVXPLXPXARPSAXXQCPXXPGRAPXXIPXPPXSXPXPPLXRKXXXXPP 359
           S+ P  P + P      P  P  AP   P P      PPL       PP
Sbjct: 430 SLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPP 478



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 17/47 (36%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
 Frame = -1

Query: 493 LXPXARPSAXXQCPXX-PGRAPXXIPXPPXSXPXPPLXRKXXXXPPV 356
           L P A PS     P   P  AP   P PP +   PPL       PP+
Sbjct: 423 LPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPL 469


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 30.3 bits (65), Expect = 0.40
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -1

Query: 493 LXPXARPSAXXQCPXXPGRAPXXIPXPPXSXPXPPL 386
           L P A+P+A  + P      P  +P  P   P PPL
Sbjct: 171 LPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPL 206


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 14/46 (30%), Positives = 16/46 (34%)
 Frame = -1

Query: 496  PLXPXARPSAXXQCPXXPGRAPXXIPXPPXSXPXPPLXRKXXXXPP 359
            P  P + P    Q    P  +    P PP S P PP        PP
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPP 1728


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,784,409
Number of Sequences: 5004
Number of extensions: 21554
Number of successful extensions: 58
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)