Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_A03
         (895 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    26   0.35 
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    24   1.8  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    24   1.8  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 14/46 (30%), Positives = 19/46 (41%)
 Frame = -2

Query: 396  GMNVPSRSFKVATSFTLPFSLASFSSAILVLYCSSVRSPVSRFCLP 259
            G   PS+   V+ S ++P  +ASF       Y   V  P     LP
Sbjct: 1289 GEGQPSKKVTVSPSASVPAKIASFDDTFTTTYKEDVTLPCLAVGLP 1334


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 586 THNEKLVSPHGAVVNLVLDRFSY 518
           T+N  LV+P+G  V  ++D  SY
Sbjct: 511 TYNRHLVAPNGDHVISLIDEISY 533


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -3

Query: 683  SQXGEXTPSPGLPVKSCRPSPPDRCDGMYST 591
            +Q G  + S G+P+K     PP    G  ST
Sbjct: 1093 AQQGSSSSSEGVPLKGTAVPPPSGSSGPGST 1123



 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 604 PSHRSGGDGLQDFTGR 651
           P H   GDG+ DF+ R
Sbjct: 196 PMHSPPGDGILDFSKR 211


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,564
Number of Sequences: 336
Number of extensions: 2818
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24823920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)