Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_A03
(895 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34622| Best HMM Match : No HMM Matches (HMM E-Value=.) 85 1e-16
SB_7528| Best HMM Match : Aldo_ket_red (HMM E-Value=0) 73 2e-13
SB_33699| Best HMM Match : Aldo_ket_red (HMM E-Value=3.1) 52 5e-07
SB_8916| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 8e-06
SB_54717| Best HMM Match : Aldo_ket_red (HMM E-Value=0) 45 7e-05
SB_56309| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.025
SB_56768| Best HMM Match : VWA (HMM E-Value=0.0042) 29 3.8
SB_52108| Best HMM Match : DUF1053 (HMM E-Value=6) 29 3.8
SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061) 29 5.1
SB_9539| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
>SB_34622| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 340
Score = 84.6 bits (200), Expect = 1e-16
Identities = 46/103 (44%), Positives = 60/103 (58%)
Frame = +2
Query: 359 VATLKLRDGTFMPVIALGTALLPPRLTTEIVETAIDMGYRAIDTAYIYGNEKLIGKAIKN 538
+AT+KL +G MPV+ LGT P V+ AI GYR ID AY Y NEK +G A++
Sbjct: 1 MATVKLNNGLEMPVLGLGTWKSKPGQVENAVKFAIKEGYRHIDCAYAYRNEKEVGDALRE 60
Query: 539 KIDDGTVRRDELFIMGKLWSTFHRTDLVETACRISLADLGLEF 667
+ V R +LFI KLW+T H V + C SL DLGL++
Sbjct: 61 LL-GSVVERKDLFITSKLWNTKHNPKDVRSNCVDSLKDLGLDY 102
>SB_7528| Best HMM Match : Aldo_ket_red (HMM E-Value=0)
Length = 407
Score = 73.3 bits (172), Expect = 2e-13
Identities = 34/73 (46%), Positives = 48/73 (65%)
Frame = +2
Query: 449 VETAIDMGYRAIDTAYIYGNEKLIGKAIKNKIDDGTVRRDELFIMGKLWSTFHRTDLVET 628
V AI++GYR ID A IYGNE IG+A+ + +G V+R+ELF+ KLW H D V
Sbjct: 71 VRLAIELGYRHIDCAEIYGNEGEIGEALSEVLTEGKVKREELFVTSKLWCDSHHPDDVLP 130
Query: 629 ACRISLADLGLEF 667
AC+ +L +L L++
Sbjct: 131 ACQATLKNLQLDY 143
Score = 36.7 bits (81), Expect = 0.025
Identities = 20/51 (39%), Positives = 29/51 (56%)
Frame = +2
Query: 449 VETAIDMGYRAIDTAYIYGNEKLIGKAIKNKIDDGTVRRDELFIMGKLWST 601
V A ++GYR ID A I+GNE G+A+ + G V+R+E G W +
Sbjct: 18 VRLAAELGYRLIDCAEIHGNE---GEALSGVLTKGKVKREE---CGSTWQS 62
>SB_33699| Best HMM Match : Aldo_ket_red (HMM E-Value=3.1)
Length = 93
Score = 52.4 bits (120), Expect = 5e-07
Identities = 33/94 (35%), Positives = 51/94 (54%)
Frame = +2
Query: 374 LRDGTFMPVIALGTALLPPRLTTEIVETAIDMGYRAIDTAYIYGNEKLIGKAIKNKIDDG 553
L DG +P LG L + T + V A++ GYR IDTA Y NEK +G+A++ +
Sbjct: 3 LSDGYKIPRFGLGLYDLDEKHTKQAVLWALENGYRMIDTAASYNNEKRVGEALR----ES 58
Query: 554 TVRRDELFIMGKLWSTFHRTDLVETACRISLADL 655
V R E++++ K++ T H + A SL+ L
Sbjct: 59 AVPRSEVYLVTKVYHTDHGYEKTMKAYDRSLSAL 92
>SB_8916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 619
Score = 48.4 bits (110), Expect = 8e-06
Identities = 37/103 (35%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
Frame = +2
Query: 362 ATLKLRDGTFMPVIALGTALLPPRLTTEIVETAIDMGYRAIDTAYIYG-NEKLIGKAIKN 538
A + L G MPV+ GTA L T +V+TA++ GYR IDTA Y +E + KAI
Sbjct: 327 ADVLLASGYTMPVMGFGTATLGED-TLSVVKTALETGYRLIDTAQGYPLSEPQVAKAI-- 383
Query: 539 KIDDGTVRRDELFIMGKLWSTFHRTDLVETACRISLADLGLEF 667
D G R+D +FI+ KL + + + +SL L ++
Sbjct: 384 -ADSGIPRKD-IFIITKLHPRYLGYEPTLKSVEMSLRALSTDY 424
>SB_54717| Best HMM Match : Aldo_ket_red (HMM E-Value=0)
Length = 333
Score = 45.2 bits (102), Expect = 7e-05
Identities = 31/102 (30%), Positives = 54/102 (52%)
Frame = +2
Query: 362 ATLKLRDGTFMPVIALGTALLPPRLTTEIVETAIDMGYRAIDTAYIYGNEKLIGKAIKNK 541
+T + DG +P++ LG + + + V A++ GYR IDTA Y NE+ +G+A++
Sbjct: 66 STRIMNDGRKIPLLGLGAHDIHSK---QAVLWALESGYRLIDTASRYHNEQSVGEAVR-- 120
Query: 542 IDDGTVRRDELFIMGKLWSTFHRTDLVETACRISLADLGLEF 667
+ R E++++ K++ T H A SL LGL +
Sbjct: 121 --CSNIPRCEIYVVTKVYFTEHGYKETMDAFYKSLTRLGLGY 160
>SB_56309| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 394
Score = 36.7 bits (81), Expect = 0.025
Identities = 17/45 (37%), Positives = 29/45 (64%)
Frame = +2
Query: 458 AIDMGYRAIDTAYIYGNEKLIGKAIKNKIDDGTVRRDELFIMGKL 592
A+ GYR +DTA IY NEK +G A++ ++R+++++ KL
Sbjct: 53 ALKNGYRMLDTADIYQNEKEVGSAVRK----SGLKREDIYVTTKL 93
>SB_56768| Best HMM Match : VWA (HMM E-Value=0.0042)
Length = 815
Score = 29.5 bits (63), Expect = 3.8
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = +2
Query: 236 SGQRRLDNGKQKRDTGDLTDEQYKTRIAELNEAKLKGSVKEVATLK 373
S R+D K RD L E++ RIA LN K KG ++ A +K
Sbjct: 90 SSASRIDGKKVIRDLAGLLRERFDERIAALNAIK-KGVEEDYAAVK 134
>SB_52108| Best HMM Match : DUF1053 (HMM E-Value=6)
Length = 349
Score = 29.5 bits (63), Expect = 3.8
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = -1
Query: 580 NEKLVSPHGAVVNLVLDRFSYELFVAVNISGIYSSVAHI 464
N++LV+ H VLD+F+ E FVA + + SVA +
Sbjct: 66 NQELVTAHDDAQENVLDQFADEAFVASAFAAMGESVASV 104
>SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
Length = 2735
Score = 29.1 bits (62), Expect = 5.1
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +1
Query: 391 HAGHSLGHSFASSTVNNGNSG 453
H GHS GHSF S V G+SG
Sbjct: 979 HPGHSFGHSFGKSKV-EGSSG 998
>SB_9539| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1642
Score = 28.3 bits (60), Expect = 8.9
Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = +2
Query: 233 GSGQRRLDNGKQKRDTGDLT---DEQYKTRIAELNEA 334
G G+ +D+G+ D+G+LT D ++K+ EL+E+
Sbjct: 1367 GGGELTIDSGELTIDSGELTIGGDPEFKSEYRELSES 1403
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,139,071
Number of Sequences: 59808
Number of extensions: 373644
Number of successful extensions: 3369
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3364
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2562198215
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -