Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_A02
         (925 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    28   2.1  
SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces pom...    27   2.8  
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa...    27   3.7  
SPCC1795.03 |gms1||UDP-galactose transporter Gms1|Schizosaccharo...    27   4.9  
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    26   8.6  

>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = +1

Query: 163 TIGNDSEADKNKGTYLTTSDVYWLYQHLQQRRINGETVPYLHELLE 300
           TI  + +  K + TY   SD+ +L QH Q +++  +   Y+H+ ++
Sbjct: 711 TIQLNRQVLKTRRTYNLFSDLGYLLQHPQVKKLVVDDTRYVHQYID 756


>SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 431

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 15/52 (28%), Positives = 29/52 (55%)
 Frame = +1

Query: 490 LIAIGQFIISIFAGFLFGFXGVEWMIGSLDFGFRLLLGVMCALVIALARNIF 645
           L+AI   I +++  + F + G EWM+  +   + + + V C  VI+L  ++F
Sbjct: 108 LLAIATSISNLYP-YAFPYTG-EWMVWLIRILYWIFVAVACIFVISLFYSLF 157


>SPBC1289.12 |usp109||U1 snRNP-associated protein
           Usp109|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 352

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +1

Query: 193 NKGTYLTTSDVYWLYQHLQQRRINGETVPYLHELLEGATIE 315
           +K TYL++   Y   Q L Q      T  Y+H+L E  T +
Sbjct: 150 DKNTYLSSPGFYGTPQPLNQFTDPNNTAVYVHQLPENITTQ 190


>SPCC1795.03 |gms1||UDP-galactose transporter
           Gms1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 353

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 529 GFLFGFXGVEWMIGSLDFGFRLLLGVMCALVIALARNI 642
           GF FG+  + W+   L  G     G++ AL +A A NI
Sbjct: 246 GFFFGYNSIVWLAILLQAGG----GIIVALCVAFADNI 279


>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +3

Query: 489 IDCYWTVHYFNICWISLWVXR 551
           +D  W   ++ I W+S+W  R
Sbjct: 267 VDLMWMAIWWEIIWLSIWAAR 287


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,555,191
Number of Sequences: 5004
Number of extensions: 48369
Number of successful extensions: 142
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)