Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_A02
         (925 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0126 - 7031739-7031861,7032187-7032272,7033277-7033421,703...    39   0.005
06_03_0403 - 20435349-20435358,20435750-20436204,20436744-20438315     30   2.3  
05_06_0057 + 25253497-25253589,25253722-25253799,25254583-252546...    28   9.1  
01_05_0652 - 23934604-23934636,23934783-23934893,23935000-239351...    28   9.1  

>02_02_0126 -
           7031739-7031861,7032187-7032272,7033277-7033421,
           7033504-7033749
          Length = 199

 Score = 39.1 bits (87), Expect = 0.005
 Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
 Frame = +1

Query: 277 PYLHELLEGATIEMPGNKVLKRNPVLEARCVKLRAQQEAREYRKMTKGVDNVRMRFPEDS 456
           P L  LL GA   +   K   ++  L+AR  KLR  QE +EY ++ + V       P   
Sbjct: 61  PPLRRLLHGADFLLSSPKPRDKSDELKARLDKLREMQERKEYAELVRDVAP-----PAKE 115

Query: 457 ISYQLKQVNRQLIAIGQFIISI-FAGFLFGF 546
            S +L    +  I  G  ++ I F G+L GF
Sbjct: 116 DSPELFSSYKDQIGFGLHVVLIMFTGYLVGF 146


>06_03_0403 - 20435349-20435358,20435750-20436204,20436744-20438315
          Length = 678

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -3

Query: 413 VIFLYSLASC*ALSFTHLASKTGFLLSTL--FPGISIVAPSKSS 288
           ++   S  SC  LS T LAS  GF+   L   PG  ++ PS SS
Sbjct: 10  LVLTISFLSCHYLSVTSLASSDGFVRCLLQKIPGELVLTPSSSS 53


>05_06_0057 +
           25253497-25253589,25253722-25253799,25254583-25254621,
           25254724-25255263,25255352-25255450,25255614-25255691,
           25255961-25256146,25256240-25256365
          Length = 412

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 629 SAITNAHITPRRRRNPKSKLPIIHSTPXNPKRNP 528
           SA    H++ +    P S +PI+HS P  P +NP
Sbjct: 165 SATLPPHVSSQYSNIP-SHMPIVHSQPQQPLQNP 197


>01_05_0652 -
           23934604-23934636,23934783-23934893,23935000-23935188,
           23935893-23936012,23936109-23936273,23936638-23936790,
           23936867-23936976,23937280-23937397,23938197-23938427,
           23938984-23939175,23939661-23939945,23940637-23940686,
           23940846-23940921,23941048-23941135,23941689-23941771,
           23941883-23942248,23942462-23942476,23942909-23943018,
           23943134-23943231,23943961-23944019
          Length = 883

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 29/108 (26%), Positives = 42/108 (38%), Gaps = 3/108 (2%)
 Frame = +1

Query: 238 QHLQQRRINGETVPYLHELLEGATIEMPGNKVLKRNPVLEARCVKLRAQQEAREYRKMTK 417
           Q  QQ+R +G        LL G    +PGN  L R     A  +  +  +E  +      
Sbjct: 155 QQQQQQRRDGT------HLLNGTASGLPGNNPLMRQNQSTANVMATKMYEERLKLPSQRD 208

Query: 418 GVDNVRMRFPEDSISYQLKQVNRQLI---AIGQFIISIFAGFLFGFXG 552
           G+D V ++      + QL   N  L+   A GQ    I  G + G  G
Sbjct: 209 GLDEVSIKQRYGENAGQLLDSNEALLKASASGQSSGQILHGTVGGLSG 256


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,961,016
Number of Sequences: 37544
Number of extensions: 264377
Number of successful extensions: 586
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2635816500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)