Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_A02
         (925 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U37429-7|AAA79351.2|  218|Caenorhabditis elegans Hypothetical pr...    50   2e-06
U23139-12|AAU20847.1|  262|Caenorhabditis elegans Hypothetical p...    30   2.0  

>U37429-7|AAA79351.2|  218|Caenorhabditis elegans Hypothetical
           protein F09E5.11 protein.
          Length = 218

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
 Frame = +1

Query: 370 KLRAQQEAREYRKMTKGVDNVRMRFPED---SISYQLKQVNRQLIAIGQFIISIFAGFLF 540
           +LR QQE   Y+++ + VD V+     D   +   +++ VNRQ+I++   +I++   F F
Sbjct: 88  ELRIQQEQDSYKRLIRDVDPVQKYGKTDHMENFGVEMRAVNRQMISVINVVITVVGSFFF 147

Query: 541 GFXGVEWMIG--SLDFGFRLLLGVMCALVI 624
           GF G+ +     +LD   R + G++ A ++
Sbjct: 148 GFSGITYAYPHLNLDLPTRFIFGLVPATIV 177


>U23139-12|AAU20847.1|  262|Caenorhabditis elegans Hypothetical
           protein F13H8.1b protein.
          Length = 262

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
 Frame = +1

Query: 235 YQHLQQR--RINGETVPYLHELLEGATIEMPGNKVLKRNPVLEARCVKLRAQQEAREY-- 402
           +  L+Q+  R N    PY  E+      E+P +  +KR P LEAR  K   Q+E      
Sbjct: 112 FDELKQKVERFNLTFKPYAPEITVDDLPEIPYSTDIKRTPRLEARPTKETIQEERNRVEI 171

Query: 403 -RKMTKGVDNVRMRFPEDSISYQLKQVNRQ 489
             +  K ++ + M     S  Y  +Q  R+
Sbjct: 172 ENQYKKTLEKIEMAKQHYSPQYFREQFERE 201


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,841,831
Number of Sequences: 27780
Number of extensions: 261010
Number of successful extensions: 634
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2370744068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)