Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_A02
         (925 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g52980.1 68418.m06579 expressed protein                             31   1.1  
At4g28710.1 68417.m04106 myosin heavy chain, putative similar to...    30   2.5  
At2g43400.1 68415.m05394 electron transfer flavoprotein-ubiquino...    29   4.4  
At5g60370.1 68418.m07570 expressed protein predicted protein, Ar...    29   5.8  
At4g37890.2 68417.m05359 zinc finger (C3HC4-type RING finger) fa...    28   7.6  
At4g37890.1 68417.m05358 zinc finger (C3HC4-type RING finger) fa...    28   7.6  
At4g17220.1 68417.m02590 expressed protein                             28   7.6  
At3g58160.1 68416.m06485 myosin heavy chain, putative similar to...    28   7.6  

>At5g52980.1 68418.m06579 expressed protein
          Length = 222

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
 Frame = +1

Query: 271 TVPYLHELLEGATIEMPGNKVLKRNPVLEARCVKLRAQQEAREYRKMTKGVDNVRMRFPE 450
           T P L  L  G+       K  +++  L+ R VKLR   E +EY ++ K +       P+
Sbjct: 66  TRPDLLGLFSGSNFVFTSPKPREKSEELKLRLVKLREIAERKEYAELVKDIT------PK 119

Query: 451 DSISYQLKQVNRQLIAIGQFI-ISIFAGFLFGF 546
             +         QL   G  + +++F G+L G+
Sbjct: 120 KQVEEPFSSYKDQL-GFGLHVGLTMFTGYLVGY 151


>At4g28710.1 68417.m04106 myosin heavy chain, putative similar to
           myosin [Arabidopsis thaliana] gi|499047|emb|CAA84066.
          Length = 899

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = +1

Query: 355 EARCVKLRAQQEAREYRKMTKGVDNVRMRFPEDSISYQL 471
           +++C++L    +A+EYR+  K +D V +   E    +Q+
Sbjct: 283 QSQCIELERMDDAKEYRETRKAMDVVGINSEEQEAIFQV 321


>At2g43400.1 68415.m05394 electron transfer flavoprotein-ubiquinone
           oxidoreductase family protein contains Pfam profile:
           PF05187 Electron transfer flavoprotein-ubiquinone 
           oxidoreductase
          Length = 633

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 17/71 (23%), Positives = 35/71 (49%)
 Frame = +1

Query: 277 PYLHELLEGATIEMPGNKVLKRNPVLEARCVKLRAQQEAREYRKMTKGVDNVRMRFPEDS 456
           PY  +L    +   P +++L  N +  +RC+   A +E+ EY  +  G     +     S
Sbjct: 59  PYSADLFRNLSPLNPNSRILGVNGITSSRCISSEAVRESIEYDVLIVGAGPAGL-----S 113

Query: 457 ISYQLKQVNRQ 489
            + +LKQ++++
Sbjct: 114 AAIRLKQLSQE 124


>At5g60370.1 68418.m07570 expressed protein predicted protein,
           Arabidopsis thaliana
          Length = 413

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = +1

Query: 388 EAREYRKMTKGVDNVRMRFPEDSISYQLKQVNRQLIAIGQFIISIFAG--FLFGFXGVEW 561
           +AR  +   + V  VR++   +   + LK +N  +  + QF+         L GF G +W
Sbjct: 152 QARHLQLEEEVVKKVRVKVESNEDKWALKLLN-SIAGVNQFLFEGRTRELLLLGFVGGQW 210

Query: 562 MIGSLD 579
           ++G +D
Sbjct: 211 IVGIID 216


>At4g37890.2 68417.m05359 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profiles PF00097: Zinc
           finger, C3HC4 type (RING finger), PF00092: von
           Willebrand factor type A domain
          Length = 711

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = -3

Query: 620 TNAHITPRRRRNPKSKLPI--IHSTPXNPKRNPANIEIM 510
           T+  +TP R R+P S L +    STP +PK +PA+  ++
Sbjct: 88  TSGDVTPTRNRSPLSFLSVSSSSSTPSSPK-SPASFSLL 125


>At4g37890.1 68417.m05358 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profiles PF00097: Zinc
           finger, C3HC4 type (RING finger), PF00092: von
           Willebrand factor type A domain
          Length = 739

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = -3

Query: 620 TNAHITPRRRRNPKSKLPI--IHSTPXNPKRNPANIEIM 510
           T+  +TP R R+P S L +    STP +PK +PA+  ++
Sbjct: 88  TSGDVTPTRNRSPLSFLSVSSSSSTPSSPK-SPASFSLL 125


>At4g17220.1 68417.m02590 expressed protein
          Length = 513

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 20/105 (19%), Positives = 49/105 (46%)
 Frame = +1

Query: 112 SSQIKKKVLKILNQANNTIGNDSEADKNKGTYLTTSDVYWLYQHLQQRRINGETVPYLHE 291
           SSQ++  V   ++  N  I    E+D+ + + +T + +   ++   +R+   +   Y  +
Sbjct: 359 SSQLRGSVTGRIHAMNQPIDRVGESDEMENSKITANGLTDQHEEDSERKTEEDGNVYSED 418

Query: 292 LLEGATIEMPGNKVLKRNPVLEARCVKLRAQQEAREYRKMTKGVD 426
           ++ G   +    +V+    + E++   + A+ E  E + + K VD
Sbjct: 419 MVSGFLYDRLQKEVIALRKLCESKEGTINAKNE--EIKMLLKKVD 461


>At3g58160.1 68416.m06485 myosin heavy chain, putative similar to
           myosin heavy chain [Arabidopsis thaliana]
           gi|602328|emb|CAA84067.
          Length = 1242

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = +1

Query: 286 HELLEGATIEMPGNKVLKRNPVLEA 360
           H  +EG T+E   N+VL+ NPVLEA
Sbjct: 177 HTAVEGRTVE---NQVLESNPVLEA 198


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,778,180
Number of Sequences: 28952
Number of extensions: 234849
Number of successful extensions: 614
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2197951248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)