Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_A01
         (885 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ...    29   3.1  
At5g07390.1 68418.m00846 respiratory burst oxidase protein A (Rb...    29   4.1  
At5g45050.2 68418.m05524 disease resistance protein-related simi...    29   5.4  
At5g45050.1 68418.m05523 disease resistance protein-related simi...    29   5.4  
At1g61040.1 68414.m06872 plus-3 domain-containing protein contai...    29   5.4  
At3g20830.1 68416.m02634 protein kinase family protein contains ...    28   7.2  
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ...    28   7.2  
At2g04235.1 68415.m00411 expressed protein weak similarity to ne...    28   9.5  

>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
           protein similar to RRM-containing protein SEB-4 [Xenopus
           laevis] GI:8895698; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 244

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 18/65 (27%), Positives = 26/65 (40%)
 Frame = -1

Query: 594 FATSDLSVDFCDARQGGGAYGKTPATRPFYGSWPFAGLLLTCSFLRYPLILWITVLPPLS 415
           F  S  S+D+         YG   A  P YGS P  G+    +   YP + +     P++
Sbjct: 138 FGFSSYSMDYNYPTSYYNVYGGATAQHPMYGSGPMTGVAAAPAAGFYPYLQFAEGNGPVT 197

Query: 414 ELIPL 400
              PL
Sbjct: 198 GYAPL 202


>At5g07390.1 68418.m00846 respiratory burst oxidase protein A
           (RbohA) / NADPH oxidase identical to respiratory burst
           oxidase protein A from Arabidopsis thaliana [gi:3242781]
          Length = 902

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 543 RPPDEHHKNRRSSQRW 590
           RPPDEH  NR  S+ W
Sbjct: 667 RPPDEHRLNRADSKHW 682


>At5g45050.2 68418.m05524 disease resistance protein-related similar
            to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
            profiles PF03106: WRKY DNA -binding domain, PF00931:
            NB-ARC domain, PF00560: Leucine Rich Repeat
          Length = 1344

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 352  PLPRSLTRCARSFGCGERYQLTQRR 426
            P PRS  RCA S GC  R Q+ + R
Sbjct: 1169 PYPRSYYRCASSKGCFARKQVERSR 1193


>At5g45050.1 68418.m05523 disease resistance protein-related similar
            to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
            profiles PF03106: WRKY DNA -binding domain, PF00931:
            NB-ARC domain, PF00560: Leucine Rich Repeat
          Length = 1372

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 352  PLPRSLTRCARSFGCGERYQLTQRR 426
            P PRS  RCA S GC  R Q+ + R
Sbjct: 1197 PYPRSYYRCASSKGCFARKQVERSR 1221


>At1g61040.1 68414.m06872 plus-3 domain-containing protein contains
           Pfam profile PF03126: Plus-3 domain
          Length = 643

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 20/98 (20%), Positives = 42/98 (42%)
 Frame = +1

Query: 361 RSLTRCARSFGCGERYQLTQRR*YGYPQNQGITQERTCEQKASKRPGTVKRPRCWRFSIG 540
           ++ T   RS    E+  ++++     P ++G+        +A+ +   +   R  R    
Sbjct: 135 KNFTEKLRSKRESEKTPVSKKETQPLPASRGVRSSARSADRAAAKDDALNELRAKRMK-- 192

Query: 541 SAPLTSITKIDAQVRGGETRQDYKDTRRFPLXSSLVRS 654
                ++ K+    +GG   +D+  T+R PL SS + S
Sbjct: 193 QQDPAALRKLRDASKGGSGSRDFSSTKRKPLASSNLSS 230


>At3g20830.1 68416.m02634 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 408

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -3

Query: 343 PIRKPPLPARWPIH*CRKNLPHL 275
           P   PP P R P H CRKN P +
Sbjct: 384 PSSAPPSPLRSPPHVCRKNDPFI 406


>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
           protein similar to RRM-containing protein SEB-4 [Xenopus
           laevis] GI:8895698; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 245

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
 Frame = -1

Query: 594 FATSDLSVDFCDARQGG-GAYGKTPATRPFYGSWPFAGLLLTCSFLRYPLILWITVLPPL 418
           F  S  S+D+    Q     YG   A  P YGS P  G+    +   YP + +     P+
Sbjct: 138 FGFSSYSMDYNYPTQSYYNVYGGATAQHPMYGSGPMTGVAAAPAAGFYPYLQFAEGNGPV 197

Query: 417 SELIPL 400
           +   PL
Sbjct: 198 TGYAPL 203


>At2g04235.1 68415.m00411 expressed protein weak similarity to
           neurofilament protein (GI:161292) [Loligo pealei]; weak
           similarity to Glucoamylase S1/S2 precursor (EC 3.2.1.3)
           (Glucan 1,4-alpha- glucosidase) (1,4-alpha-D-glucan
           glucohydrolase) (Swiss-Prot:P08640) [Saccharomyces
           cerevisiae]
          Length = 1226

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 612 RYQAFPPGKLPRALSCXXPXPLTG 683
           R  AF  G LP++LSC  P P  G
Sbjct: 342 RQSAFLVGMLPQSLSCVTPSPTQG 365


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,150,995
Number of Sequences: 28952
Number of extensions: 280709
Number of successful extensions: 670
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2071520424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)