Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_P24
         (931 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0178 + 6195402-6199158,6199438-6200003                           29   5.3  
11_01_0551 + 4361640-4363386,4363443-4363687                           29   7.0  

>03_02_0178 + 6195402-6199158,6199438-6200003
          Length = 1440

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 17/37 (45%), Positives = 19/37 (51%)
 Frame = +1

Query: 580 RRSSQRWRNPTGL*RYQAFPPGSSLVRSPXXDPCRLP 690
           RR S  WR+  GL  Y+A P  S    SP   P RLP
Sbjct: 113 RRQSGGWRDSEGLDGYRAAPRRSG--ASPPTPPLRLP 147


>11_01_0551 + 4361640-4363386,4363443-4363687
          Length = 663

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = +2

Query: 533 WRFSIGSAPLTSITKID--AQVRGGETRQDYKDTRRF-PLEAPSCALLXPTPAAYRIPVR 703
           WR    SA    I  +D  A ++  +T   Y+   R  P   P+C  L P+P  YR P+R
Sbjct: 341 WRLCNTSAGADYIPCLDNEAAIKKLKTTAHYEHRERHCPASPPTC--LVPSPEGYRDPIR 398


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,135,870
Number of Sequences: 37544
Number of extensions: 486678
Number of successful extensions: 1361
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1361
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2659245980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)