Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_P24
(931 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g24220.1 68414.m03054 paired amphipathic helix repeat-contain... 32 0.62
At5g07390.1 68418.m00846 respiratory burst oxidase protein A (Rb... 29 4.4
At3g20830.1 68416.m02634 protein kinase family protein contains ... 29 4.4
At1g68170.1 68414.m07787 nodulin MtN21 family protein similar to... 29 4.4
At5g45050.2 68418.m05524 disease resistance protein-related simi... 29 5.8
At5g45050.1 68418.m05523 disease resistance protein-related simi... 29 5.8
At3g55480.2 68416.m06162 adaptin family protein similar to AP-3 ... 29 5.8
At3g55480.1 68416.m06161 adaptin family protein similar to AP-3 ... 29 5.8
>At1g24220.1 68414.m03054 paired amphipathic helix repeat-containing
protein weak similarity to transcription co-repressor
Sin3 [Xenopus laevis] GI:4960210; contains Pfam profile
PF02671: Paired amphipathic helix repeat
Length = 744
Score = 31.9 bits (69), Expect = 0.62
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = -2
Query: 474 SCVIPLILWITVLPPLSELIPLAAAERPXXXXXXXXXXXXXQYANRLSPRVGRXI--NAE 301
S IP+ L IT++PP + + A++P + N+L P+ R I AE
Sbjct: 260 SRTIPVKLKITIIPPKARRTIPSEADKP-------THTDELNFMNKLPPKRRRTIPSEAE 312
Query: 300 KTSHTSXLNLKHKM 259
K +HT LN +K+
Sbjct: 313 KPTHTDELNFMNKL 326
>At5g07390.1 68418.m00846 respiratory burst oxidase protein A
(RbohA) / NADPH oxidase identical to respiratory burst
oxidase protein A from Arabidopsis thaliana [gi:3242781]
Length = 902
Score = 29.1 bits (62), Expect = 4.4
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +1
Query: 553 RPPDEHHKNRRSSQRW 600
RPPDEH NR S+ W
Sbjct: 667 RPPDEHRLNRADSKHW 682
>At3g20830.1 68416.m02634 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 408
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -1
Query: 352 PIRKPPLPARWPXH*CRKNLPHL 284
P PP P R P H CRKN P +
Sbjct: 384 PSSAPPSPLRSPPHVCRKNDPFI 406
>At1g68170.1 68414.m07787 nodulin MtN21 family protein similar to
MtN21 GI:2598575 (root nodule development) from
[Medicago truncatula]
Length = 356
Score = 29.1 bits (62), Expect = 4.4
Identities = 20/46 (43%), Positives = 25/46 (54%)
Frame = -2
Query: 540 KRQQRGLFTVPGLLLAFCSHVLSCVIPLILWITVLPPLSELIPLAA 403
+R++R FT +LLA S +L VIP IL IT L S AA
Sbjct: 54 QRKKRPEFTCRLMLLALLSGLLGVVIPSILTITGLALTSATFTSAA 99
>At5g45050.2 68418.m05524 disease resistance protein-related similar
to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
profiles PF03106: WRKY DNA -binding domain, PF00931:
NB-ARC domain, PF00560: Leucine Rich Repeat
Length = 1344
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1
Query: 361 PLPRSLTRCARSFGCGERYQLTQRR 435
P PRS RCA S GC R Q+ + R
Sbjct: 1169 PYPRSYYRCASSKGCFARKQVERSR 1193
>At5g45050.1 68418.m05523 disease resistance protein-related similar
to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
profiles PF03106: WRKY DNA -binding domain, PF00931:
NB-ARC domain, PF00560: Leucine Rich Repeat
Length = 1372
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1
Query: 361 PLPRSLTRCARSFGCGERYQLTQRR 435
P PRS RCA S GC R Q+ + R
Sbjct: 1197 PYPRSYYRCASSKGCFARKQVERSR 1221
>At3g55480.2 68416.m06162 adaptin family protein similar to AP-3
complex beta3A subunit, Homo sapiens, SP|O00203; contains
Pfam profile: PF01602 Adaptin N terminal region
Length = 987
Score = 28.7 bits (61), Expect = 5.8
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = -2
Query: 507 GLLLAFCSHVLSCVIPLILWITVLPPLSELIPL 409
GL L F S +LS IPL++ ITV +E++ L
Sbjct: 924 GLRLRFSSKILSSEIPLLITITVEGKCTEVLNL 956
>At3g55480.1 68416.m06161 adaptin family protein similar to AP-3
complex beta3A subunit, Homo sapiens, SP|O00203; contains
Pfam profile: PF01602 Adaptin N terminal region
Length = 987
Score = 28.7 bits (61), Expect = 5.8
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = -2
Query: 507 GLLLAFCSHVLSCVIPLILWITVLPPLSELIPL 409
GL L F S +LS IPL++ ITV +E++ L
Sbjct: 924 GLRLRFSSKILSSEIPLLITITVEGKCTEVLNL 956
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,363,579
Number of Sequences: 28952
Number of extensions: 341642
Number of successful extensions: 831
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2217402144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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