Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_P23
         (1135 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    37   0.006
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.68 
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    28   2.8  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   2.8  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 36.7 bits (81), Expect = 0.006
 Identities = 27/79 (34%), Positives = 27/79 (34%), Gaps = 3/79 (3%)
 Frame = -3

Query: 662 PXXSLRXXAXARPXXSXPXPPPLXXPPXLSPRXXPXXXLPPXXSPTAXXAXLLLAPLXP- 486
           P   LR    A P  S P P P   PP  S        LPP   P A       AP  P 
Sbjct: 133 PQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPS 192

Query: 485 --PXPXXHVHPSXLSXXPV 435
             P     V P  LS  PV
Sbjct: 193 AVPPMPPKVPPPPLSQAPV 211


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.9 bits (64), Expect = 0.68
 Identities = 26/90 (28%), Positives = 34/90 (37%), Gaps = 7/90 (7%)
 Frame = -3

Query: 632 ARPXXSXPXPPPLXX------PPXLSPRXXPXXXLPPXXSPTAXXAXLLLAPLXPP-XPX 474
           A P  S P  PPL        PP  +P   P    PP   P+A  +  + AP  PP  P 
Sbjct: 394 AIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSA-PPSLPPSAPPSLPMGAPAAPPLPPS 452

Query: 473 XHVHPSXLSXXPVFFPXIXSXYSPSXXPXP 384
             + P   +  P   P   +  +P   P P
Sbjct: 453 APIAPPLPAGMPAAPPLPPAAPAPPPAPAP 482



 Score = 27.9 bits (59), Expect = 2.8
 Identities = 16/57 (28%), Positives = 21/57 (36%)
 Frame = -1

Query: 736 PPAXPFXXPFTXXGPPAXPTMXSXVPXXLSAPVLXLAXPXPXPXXPRXSXHPXSLLA 566
           PP+ P   P     PP+ P          +AP L  A P P P        P + +A
Sbjct: 436 PPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAPVASIA 492



 Score = 26.2 bits (55), Expect = 8.4
 Identities = 16/52 (30%), Positives = 20/52 (38%)
 Frame = -1

Query: 754 PAXXLXPPAXPFXXPFTXXGPPAXPTMXSXVPXXLSAPVLXLAXPXPXPXXP 599
           P+  +  PA P   P     PP    M +  P   +AP    A P P P  P
Sbjct: 437 PSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPA-PAPAPAAP 487


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 12/33 (36%), Positives = 13/33 (39%)
 Frame = -3

Query: 611  PXPPPLXXPPXLSPRXXPXXXLPPXXSPTAXXA 513
            P PPP+  P    P   P   LPP   P    A
Sbjct: 1883 PPPPPMALPKAGPPSAAPTSALPPAGPPAGATA 1915


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 20/76 (26%), Positives = 23/76 (30%)
 Frame = -3

Query: 611  PXPPPLXXPPXLSPRXXPXXXLPPXXSPTAXXAXLLLAPLXPPXPXXHVHPSXLSXXPVF 432
            P PPP   PP   P        PP  +P        L P+  P       P+  S  P  
Sbjct: 1190 PVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSV 1249

Query: 431  FPXIXSXYSPSXXPXP 384
                 S  SP     P
Sbjct: 1250 STPRSSVPSPHSNASP 1265



 Score = 26.2 bits (55), Expect = 8.4
 Identities = 17/61 (27%), Positives = 22/61 (36%), Gaps = 6/61 (9%)
 Frame = -3

Query: 611  PXPPPLXXPPX------LSPRXXPXXXLPPXXSPTAXXAXLLLAPLXPPXPXXHVHPSXL 450
            P PPP   PP       L P   P    PP  +P++    +       P P  +  PS  
Sbjct: 1209 PVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTPRSSVPSPHSNASPSPT 1268

Query: 449  S 447
            S
Sbjct: 1269 S 1269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,822,937
Number of Sequences: 5004
Number of extensions: 17339
Number of successful extensions: 70
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 603631146
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)