Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_P23
(1135 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39666-1|AAA80412.2| 644|Caenorhabditis elegans Nematode astaci... 31 1.5
AF098501-3|AAM69106.1| 275|Caenorhabditis elegans Hypothetical ... 31 1.5
AF098501-2|AAM69105.1| 298|Caenorhabditis elegans Hypothetical ... 31 1.5
AF098501-1|AAC67404.2| 548|Caenorhabditis elegans Hypothetical ... 31 1.5
Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical pr... 31 2.0
L23648-9|AAK95877.1| 466|Caenorhabditis elegans Prion-like-(q/n... 30 2.6
AF016448-12|AAB65959.1| 316|Caenorhabditis elegans Hypothetical... 30 2.6
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 30 3.5
AL032646-7|CAA21680.1| 485|Caenorhabditis elegans Hypothetical ... 30 3.5
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 29 4.6
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 6.1
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 29 6.1
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 6.1
AF039718-5|AAP68905.1| 760|Caenorhabditis elegans Prion-like-(q... 29 8.0
AF039718-4|AAP68906.2| 696|Caenorhabditis elegans Prion-like-(q... 29 8.0
>U39666-1|AAA80412.2| 644|Caenorhabditis elegans Nematode astacin
protease protein33 protein.
Length = 644
Score = 31.1 bits (67), Expect = 1.5
Identities = 14/27 (51%), Positives = 14/27 (51%)
Frame = -3
Query: 1001 PPPXRNXXHPPXHXTPPTXLPPXXPYP 921
PPP R PP H PP LPP P P
Sbjct: 63 PPPWRR---PPWHRRPPWGLPPPPPPP 86
>AF098501-3|AAM69106.1| 275|Caenorhabditis elegans Hypothetical
protein H28G03.2c protein.
Length = 275
Score = 31.1 bits (67), Expect = 1.5
Identities = 22/74 (29%), Positives = 24/74 (32%)
Frame = -3
Query: 605 PPPLXXPPXLSPRXXPXXXLPPXXSPTAXXAXLLLAPLXPPXPXXHVHPSXLSXXPVFFP 426
PPP PP P P PP L AP P P + P S P P
Sbjct: 83 PPPGMGPPPFMP--PPIGMPPPPLGMPPPHIGLGAAPYAVPPPMSLLGPPPFSVPPSVPP 140
Query: 425 XIXSXYSPSXXPXP 384
S +P P P
Sbjct: 141 PTSSAAAPIVPPPP 154
>AF098501-2|AAM69105.1| 298|Caenorhabditis elegans Hypothetical
protein H28G03.2b protein.
Length = 298
Score = 31.1 bits (67), Expect = 1.5
Identities = 22/74 (29%), Positives = 24/74 (32%)
Frame = -3
Query: 605 PPPLXXPPXLSPRXXPXXXLPPXXSPTAXXAXLLLAPLXPPXPXXHVHPSXLSXXPVFFP 426
PPP PP P P PP L AP P P + P S P P
Sbjct: 106 PPPGMGPPPFMP--PPIGMPPPPLGMPPPHIGLGAAPYAVPPPMSLLGPPPFSVPPSVPP 163
Query: 425 XIXSXYSPSXXPXP 384
S +P P P
Sbjct: 164 PTSSAAAPIVPPPP 177
>AF098501-1|AAC67404.2| 548|Caenorhabditis elegans Hypothetical
protein H28G03.2a protein.
Length = 548
Score = 31.1 bits (67), Expect = 1.5
Identities = 22/74 (29%), Positives = 24/74 (32%)
Frame = -3
Query: 605 PPPLXXPPXLSPRXXPXXXLPPXXSPTAXXAXLLLAPLXPPXPXXHVHPSXLSXXPVFFP 426
PPP PP P P PP L AP P P + P S P P
Sbjct: 356 PPPGMGPPPFMP--PPIGMPPPPLGMPPPHIGLGAAPYAVPPPMSLLGPPPFSVPPSVPP 413
Query: 425 XIXSXYSPSXXPXP 384
S +P P P
Sbjct: 414 PTSSAAAPIVPPPP 427
>Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical
protein C18D11.4 protein.
Length = 309
Score = 30.7 bits (66), Expect = 2.0
Identities = 19/62 (30%), Positives = 21/62 (33%)
Frame = +1
Query: 427 GKKTGXXESXDGWTXXXGXGGXRGARRRXAXXAVGEXXGGXXXXGXXRGERXGGXXSGGG 606
G +G G G RG R G GG G G+R GG GGG
Sbjct: 172 GGSSGGGRFGGGGGDRFNDRGSRGGDRYGGDRRGGGGGGGGDRYGGGGGDRYGGDRYGGG 231
Query: 607 XG 612
G
Sbjct: 232 GG 233
>L23648-9|AAK95877.1| 466|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 38
protein.
Length = 466
Score = 30.3 bits (65), Expect = 2.6
Identities = 21/68 (30%), Positives = 23/68 (33%), Gaps = 2/68 (2%)
Frame = -3
Query: 626 PXXSXPXPPPLXXPPXLSPRXXPXXXLPPXXSPTA--XXAXLLLAPLXPPXPXXHVHPSX 453
P P P PP + P P PP PT L APL P P H S
Sbjct: 96 PMHGMPPGMPQGMPPMMDPN-MPDFSSPPMHHPTTSLLAQHLSSAPLPPAPPQQQSHLSQ 154
Query: 452 LSXXPVFF 429
L P +
Sbjct: 155 LLQQPTTY 162
>AF016448-12|AAB65959.1| 316|Caenorhabditis elegans Hypothetical
protein F41E6.11 protein.
Length = 316
Score = 30.3 bits (65), Expect = 2.6
Identities = 19/81 (23%), Positives = 25/81 (30%)
Frame = -3
Query: 626 PXXSXPXPPPLXXPPXLSPRXXPXXXLPPXXSPTAXXAXLLLAPLXPPXPXXHVHPSXLS 447
P + P PP P P P P + P+ PP P +P +
Sbjct: 34 PVCATPPCPPQYAPLPPPPMPAPAPAYNPYPCANPPCIVVEPMPVAPPAPAPAYNPYPCA 93
Query: 446 XXPVFFPXIXSXYSPSXXPXP 384
P P I +P P P
Sbjct: 94 TPPCPLPYIPEPVAPVPAPAP 114
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 29.9 bits (64), Expect = 3.5
Identities = 18/52 (34%), Positives = 21/52 (40%)
Frame = -3
Query: 632 ARPXXSXPXPPPLXXPPXLSPRXXPXXXLPPXXSPTAXXAXLLLAPLXPPXP 477
+R S P PPP PP + PR P PP P + P PP P
Sbjct: 131 SRAGGSSPPPPP---PPRV-PRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSP 178
>AL032646-7|CAA21680.1| 485|Caenorhabditis elegans Hypothetical
protein Y54E2A.8 protein.
Length = 485
Score = 29.9 bits (64), Expect = 3.5
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = -3
Query: 626 PXXSXPXPPPLXXPPXLSPRXXPXXXLPPXXSPTAXXAXLLLAPLXPP 483
P P P P+ PP P P L A + + +APL PP
Sbjct: 154 PPTPIPTPVPILEPPPPPPPVPPLSPLYKVLEIPATPSPIFVAPLPPP 201
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 29.5 bits (63), Expect = 4.6
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = -3
Query: 611 PXPPPLXXPPXLSPRXXPXXXLPPXXSPTAXXAXLLLAPLXPPXP 477
P PPP PP +S + LP P ++L P PP P
Sbjct: 1354 PVPPPPPPPPTMS-KAPTGVPLPVPPPPPLFSPSMILPPPPPPLP 1397
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.1 bits (62), Expect = 6.1
Identities = 17/68 (25%), Positives = 23/68 (33%), Gaps = 5/68 (7%)
Frame = -3
Query: 626 PXXSXPXPPPLXXPPXLSPRXXPXXXL-----PPXXSPTAXXAXLLLAPLXPPXPXXHVH 462
P P PPP+ P ++PR P PP P + + PP P
Sbjct: 267 PPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFG 326
Query: 461 PSXLSXXP 438
P + P
Sbjct: 327 PPGMGGMP 334
Score = 29.1 bits (62), Expect = 6.1
Identities = 25/98 (25%), Positives = 30/98 (30%), Gaps = 5/98 (5%)
Frame = -1
Query: 754 PAXXLXPPAXPFXXPFTXXGPPAXPTMXSXVPXXLSAPVLXLAXPXPXPXXPR-----XS 590
P+ + PP P P GPP P M P P P P P R
Sbjct: 291 PSSGMWPPPPP-PPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPP 349
Query: 589 XHPXSLLAVYHXAXSLPXXLXPPAXPLSFXLLXLPPXP 476
P + P PPA P ++ PP P
Sbjct: 350 PPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPPPPP 387
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 29.1 bits (62), Expect = 6.1
Identities = 21/76 (27%), Positives = 27/76 (35%)
Frame = -3
Query: 626 PXXSXPXPPPLXXPPXLSPRXXPXXXLPPXXSPTAXXAXLLLAPLXPPXPXXHVHPSXLS 447
P P PPP+ PP L P PP P + P PP P + P
Sbjct: 27 PPPCPPPPPPMCAPPPLP--CPPPPICPPQFCPPPP-----MCPPPPPPPPPPMCPPPPP 79
Query: 446 XXPVFFPXIXSXYSPS 399
P + P Y+P+
Sbjct: 80 PMPSYSP--CQSYAPA 93
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.1 bits (62), Expect = 6.1
Identities = 17/68 (25%), Positives = 23/68 (33%), Gaps = 5/68 (7%)
Frame = -3
Query: 626 PXXSXPXPPPLXXPPXLSPRXXPXXXL-----PPXXSPTAXXAXLLLAPLXPPXPXXHVH 462
P P PPP+ P ++PR P PP P + + PP P
Sbjct: 277 PPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFG 336
Query: 461 PSXLSXXP 438
P + P
Sbjct: 337 PPGMGGMP 344
Score = 29.1 bits (62), Expect = 6.1
Identities = 25/98 (25%), Positives = 30/98 (30%), Gaps = 5/98 (5%)
Frame = -1
Query: 754 PAXXLXPPAXPFXXPFTXXGPPAXPTMXSXVPXXLSAPVLXLAXPXPXPXXPR-----XS 590
P+ + PP P P GPP P M P P P P P R
Sbjct: 301 PSSGMWPPPPP-PPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPP 359
Query: 589 XHPXSLLAVYHXAXSLPXXLXPPAXPLSFXLLXLPPXP 476
P + P PPA P ++ PP P
Sbjct: 360 PPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPPPPP 397
>AF039718-5|AAP68905.1| 760|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
isoform a protein.
Length = 760
Score = 28.7 bits (61), Expect = 8.0
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -3
Query: 1007 SAPPPXRNXXHPPXHXTPPTXLPPXXPYPXXFF 909
S+ PP + +P H PT LPP +P F
Sbjct: 592 SSTPPQTSVRNPKYHVPTPTDLPPPPVWPAPNF 624
>AF039718-4|AAP68906.2| 696|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
isoform b protein.
Length = 696
Score = 28.7 bits (61), Expect = 8.0
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -3
Query: 1007 SAPPPXRNXXHPPXHXTPPTXLPPXXPYPXXFF 909
S+ PP + +P H PT LPP +P F
Sbjct: 494 SSTPPQTSVRNPKYHVPTPTDLPPPPVWPAPNF 526
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,936,082
Number of Sequences: 27780
Number of extensions: 129843
Number of successful extensions: 784
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3067730652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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