Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_P22
         (890 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100306-4|ABB88215.1|  166|Caenorhabditis elegans Hypothetical ...    29   3.4  
AC006632-1|AAK85466.1|  311|Caenorhabditis elegans Hypothetical ...    29   4.5  
Z81088-11|CAB03132.1|  339|Caenorhabditis elegans Hypothetical p...    29   5.9  
U40427-3|AAA81469.1|  320|Caenorhabditis elegans Hypothetical pr...    29   5.9  
Z92830-2|CAB07355.2|  330|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>AF100306-4|ABB88215.1|  166|Caenorhabditis elegans Hypothetical
           protein T24C4.8 protein.
          Length = 166

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +1

Query: 499 FKDFWISWHSGKFQYGL 549
           F   WISW  GKF YG+
Sbjct: 23  FTKLWISWSIGKFSYGI 39


>AC006632-1|AAK85466.1|  311|Caenorhabditis elegans Hypothetical
           protein F28A10.1 protein.
          Length = 311

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 14/45 (31%), Positives = 27/45 (60%)
 Frame = +1

Query: 406 LYIGDVFKLVDILEGNVVDYYNKDPPTSFIEFKDFWISWHSGKFQ 540
           +++   + L DIL+ NV+DY+  D  + + E+  F I + +GK +
Sbjct: 203 VHVDIYYFLKDILDKNVIDYFWMD--SEYAEYGTFDIFYENGKLE 245


>Z81088-11|CAB03132.1|  339|Caenorhabditis elegans Hypothetical
           protein F53F1.11 protein.
          Length = 339

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 18/71 (25%), Positives = 30/71 (42%)
 Frame = -3

Query: 681 EYWGSFNHPSNLSFIYHCRDMKTYKTNFFCILKFYTSHGFNVRTQTILKFSTVPRYPKIF 502
           +Y GS +    LSF+ HC     +        +FY  H   +   T+LK + +   P + 
Sbjct: 81  KYTGSLSCKVGLSFLLHCLTHSVWSLLISFGYRFYILHNPALSRLTLLKITIMFYIPSLV 140

Query: 501 ELDKRSWWVFV 469
           +     W +FV
Sbjct: 141 QA-LTYWTLFV 150


>U40427-3|AAA81469.1|  320|Caenorhabditis elegans Hypothetical
           protein F43C9.1 protein.
          Length = 320

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 688 SLHRKSDKEIEGGELRWVKMTNNSSLPMDAIVGGYENE 801
           S H  S K  +    RW+  T + +LP D I+   +N+
Sbjct: 167 SFHSDSLKSAKFDHFRWISSTGSKTLPSDIILRKLQND 204


>Z92830-2|CAB07355.2|  330|Caenorhabditis elegans Hypothetical
           protein F11A5.2 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = -3

Query: 603 NFFCILKFYTSHGFNVRTQTILKFSTVPRYPKIFELDKRSWWVFVVIINN 454
           N+   L +Y     +V  QT  + +T   +P+  +LD     ++V+++NN
Sbjct: 139 NYILGLLYYVPTVLSVPEQTSARAATFKEFPEFRQLDTPENPIYVLVLNN 188


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,447,095
Number of Sequences: 27780
Number of extensions: 379430
Number of successful extensions: 758
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)