Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_P22
         (890 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g17710.1 68416.m02260 F-box family protein contains F-box dom...    33   0.19 
At5g61340.1 68418.m07697 expressed protein                             29   4.1  
At5g53510.1 68418.m06650 oligopeptide transporter OPT family pro...    28   9.6  

>At3g17710.1 68416.m02260 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 368

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 23/92 (25%), Positives = 31/92 (33%)
 Frame = -3

Query: 678 YWGSFNHPSNLSFIYHCRDMKTYKTNFFCILKFYTSHGFNVRTQTILKFSTVPRYPKIFE 499
           YW + NHP  L +     D        FC+L      G N     + K        + FE
Sbjct: 205 YWLAHNHPETLEYFIETFDFSMEIFKPFCLLPCRKDFGSNELVLAVFKEDRFSLLKQCFE 264

Query: 498 LDKRSWWVFVVIINNITL*YVYKFKYIPNIQL 403
             K   WV  + I+        KF  +P   L
Sbjct: 265 TTKIEIWVTKMKIDREEEVVWIKFMTLPTTNL 296


>At5g61340.1 68418.m07697 expressed protein
          Length = 326

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -3

Query: 669 SFNHPSNLSFIYHCRDMKTYKTNFFCIL 586
           S NH ++ S +++ R +KTY  NFF +L
Sbjct: 111 SNNHSADSSSVFYLRLLKTYVCNFFFLL 138


>At5g53510.1 68418.m06650 oligopeptide transporter OPT family
           protein similar to SP|P40900 Sexual differentiation
           process protein isp4 {Schizosaccharomyces pombe},
           oligopeptide transporter Opt1p [Candida albicans]
           GI:2367386; contains Pfam profile PF03169: OPT
           oligopeptide transporter protein
          Length = 741

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 483 WWVFVVIINNITL*YVYKFKYIPNIQL 403
           WW +V+++ NI L     F Y   +QL
Sbjct: 420 WWFYVILVLNIALIMFISFYYNATVQL 446


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,340,765
Number of Sequences: 28952
Number of extensions: 351768
Number of successful extensions: 680
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2090971320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)