Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_P21
         (974 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    25   0.67 
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    24   2.1  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    24   2.1  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    22   6.3  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    22   8.3  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 25.4 bits (53), Expect = 0.67
 Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 4/48 (8%)
 Frame = +1

Query: 478 RGGGXXXPGPGAPXPGXXXXXXXPPXPGG---XGXXAPRG-PXPXXSP 609
           +GGG   P PG+  P        PP   G    G   P+G P P   P
Sbjct: 38  QGGGAVQPDPGSCDPSVGLRQGIPPHHYGGPPSGGQPPQGMPYPRFPP 85



 Score = 22.6 bits (46), Expect = 4.7
 Identities = 13/34 (38%), Positives = 13/34 (38%)
 Frame = +3

Query: 378 GXPPXKRGXPXXPGXVXGPRGXPPPGXXPXPRXP 479
           G PP   G P        P G  PP   P PR P
Sbjct: 59  GIPPHHYGGP--------PSGGQPPQGMPYPRFP 84


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 9/21 (42%), Positives = 9/21 (42%)
 Frame = +1

Query: 904 PPVPPPXPXXPPXGXPXPPPP 966
           PP P P P       P PP P
Sbjct: 250 PPTPKPRPTKVSRRKPRPPRP 270


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 15/54 (27%), Positives = 17/54 (31%), Gaps = 1/54 (1%)
 Frame = +3

Query: 546 APPPRGXRXXGPXGAPXPXL-PPXPPXPPGXXGGGPXPXXGPXPXXPXPPXXXP 704
           +PP        P   P P +  P P  PP        P     P  P PP   P
Sbjct: 138 SPPGNVLNLTMPKYEPNPSIIDPGPALPPTGFLCNNYPPLPQVPPLPLPPIFPP 191



 Score = 23.4 bits (48), Expect = 2.7
 Identities = 13/44 (29%), Positives = 14/44 (31%)
 Frame = +1

Query: 805 PXPXXGPPPPXXXPXXXPPPXXGPXXAXPPXXPPPVPPPXPXXP 936
           P P    P P   P         P    PP   PP+ PP    P
Sbjct: 153 PNPSIIDPGPALPPTGFLCNNYPPLPQVPPLPLPPIFPPTMINP 196



 Score = 23.0 bits (47), Expect = 3.6
 Identities = 15/44 (34%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
 Frame = +1

Query: 811 PXXGPPPPXXXPXXXPPPXXGPXXAXPPXXP-PPVPPPXPXXPP 939
           P   P P    P    PP        PP    PP+P P P  PP
Sbjct: 149 PKYEPNPSIIDPGPALPPTGFLCNNYPPLPQVPPLPLP-PIFPP 191



 Score = 23.0 bits (47), Expect = 3.6
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +2

Query: 707 PPXPXXPXAPXXPXXPP 757
           PP P  P  P  P  PP
Sbjct: 175 PPLPQVPPLPLPPIFPP 191



 Score = 21.8 bits (44), Expect = 8.3
 Identities = 12/42 (28%), Positives = 13/42 (30%)
 Frame = +1

Query: 796 PXXPXPXXGPPPPXXXPXXXPPPXXGPXXAXPPXXPPPVPPP 921
           P    P    PP        PP    P    PP  PP +  P
Sbjct: 155 PSIIDPGPALPPTGFLCNNYPPLPQVPPLPLPPIFPPTMINP 196



 Score = 21.8 bits (44), Expect = 8.3
 Identities = 10/30 (33%), Positives = 10/30 (33%)
 Frame = +2

Query: 764 PPPPPXXXXXXXXXPXPPXXPPPPPPXXXP 853
           P  PP         P P   P P PP   P
Sbjct: 162 PALPPTGFLCNNYPPLPQVPPLPLPPIFPP 191


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -1

Query: 962 GGGXGXPXGGXXGXGGG 912
           GGG G    G  G GGG
Sbjct: 92  GGGRGGGRDGDRGDGGG 108


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 10/30 (33%), Positives = 10/30 (33%)
 Frame = +2

Query: 764 PPPPPXXXXXXXXXPXPPXXPPPPPPXXXP 853
           P  PP         P P   P P PP   P
Sbjct: 162 PALPPAGFLCNNYLPLPQVPPLPLPPIFAP 191


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.315    0.154    0.555 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,767
Number of Sequences: 336
Number of extensions: 6774
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 27616611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)