Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_P20
         (906 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p...    27   3.7  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        27   4.8  
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual      27   4.8  
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    26   6.4  
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    26   8.5  

>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 505

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = -3

Query: 349 VHV*STAPPGPTFALSTSVTRYIFPSSPVASPDDNGSTSGPHCLMKCPR 203
           +HV  T   G T A ++S+ + I  S   + P   G  + PH    C R
Sbjct: 82  IHVAGTKGKGSTCAFTSSILQQIQKSGERSIPKCIGMYTSPHLRSVCER 130


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 376  SDFFCGDFGVHV*STAPPGPTFALSTSVT 290
            S FF GDFG+ +  +     T++L T  T
Sbjct: 1517 SSFFIGDFGIPLGDSVESDSTYSLHTDTT 1545


>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 478

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = +3

Query: 141 LCNRYCGGSHTVTTPAQRVARLGHFIKQWGPDVLPLSSGLATGDDGKMYRVTDV 302
           LC+    GS T+T+       L +F++   P +LP    L + DD KM+ V D+
Sbjct: 201 LCD--AAGSGTITSYTIS-CMLVNFLQTRNPPILPAMLDLMSNDDNKMF-VDDI 250


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 473 ISHSFYLFSETVSFQTSAFGTNRRRFM 393
           + HS Y+ S  VS + SAF  ++ +F+
Sbjct: 731 VQHSLYILSLIVSLRPSAFDVSQLKFL 757


>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +3

Query: 54  PQRNLHXWENXDKHVTKQPPRPKSESDK-HLCNR 152
           PQ +L  W    K++ K+ P P S+SD+ + C R
Sbjct: 158 PQHSLESWRQHYKYMKKRLP-PVSDSDESNYCQR 190


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,115,171
Number of Sequences: 5004
Number of extensions: 42412
Number of successful extensions: 122
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)