Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_P20
         (906 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0026 + 219663-220843,222201-222447,222574-224535                 30   2.9  
11_01_0026 + 193383-194566,195726-195972,196099-198063                 30   2.9  
05_03_0510 + 14864430-14864792,14865234-14865485,14865573-148656...    29   5.1  
12_02_0974 + 24988147-24989253                                         28   8.9  
11_01_0660 + 5382460-5382764,5383854-5384348,5384454-5384541,538...    28   8.9  
04_03_0768 - 19396146-19396607,19397855-19398175,19398424-193995...    28   8.9  
03_05_0990 - 29503950-29504462,29504567-29504686,29514956-295150...    28   8.9  
03_02_0390 + 8056006-8057502                                           28   8.9  

>12_01_0026 + 219663-220843,222201-222447,222574-224535
          Length = 1129

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -2

Query: 335 NSTPWSDVRAFHVSHSVHLSVIAGS-KS*RQW*HVRSPLLDEVSETSN 195
           NS  WS +     SHS   SV +G   +  QW   RSPL  + S+ SN
Sbjct: 676 NSCSWSSINVGKTSHSTLHSVASGGFSAFGQW-QKRSPLAAQNSDLSN 722


>11_01_0026 + 193383-194566,195726-195972,196099-198063
          Length = 1131

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -2

Query: 335 NSTPWSDVRAFHVSHSVHLSVIAGS-KS*RQW*HVRSPLLDEVSETSN 195
           NS  WS +     SHS   SV +G   +  QW   RSPL  + S+ SN
Sbjct: 677 NSCSWSSINVGKTSHSTLHSVASGGFSAFGQW-QKRSPLAAQNSDLSN 723


>05_03_0510 +
           14864430-14864792,14865234-14865485,14865573-14865671,
           14865789-14866082,14866630-14867010
          Length = 462

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -2

Query: 359 RLRCTRLINSTPWSDVRAFHVSHSVHLSVIAGSKS*RQW*HVRSPLLDEV 210
           RL+  R+I S    +  A H  H+    V AG  +  +W HVR  L  E+
Sbjct: 157 RLKGLRMIQSPVTPEDEAIHHGHTSQSPVGAGEDAPFRWDHVRVKLKKEI 206


>12_02_0974 + 24988147-24989253
          Length = 368

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 291 VTDVESANVGPGGAVDQTCTPKSPQKKS 374
           V D+++   G GGAV + C    P+KKS
Sbjct: 187 VLDLDNGGGGEGGAVLRPCIADDPEKKS 214


>11_01_0660 +
           5382460-5382764,5383854-5384348,5384454-5384541,
           5384629-5384691,5384965-5385125,5385214-5385289,
           5385395-5385454,5385555-5385662,5385746-5385982,
           5386192-5386307,5386756-5386813
          Length = 588

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 277 PSSPVASPDDNGSTSGPHCLMKCP 206
           P SP A  DD+ S+S PH L + P
Sbjct: 210 PGSPTARQDDSRSSSSPHPLPRPP 233


>04_03_0768 -
           19396146-19396607,19397855-19398175,19398424-19399569,
           19400073-19400855,19402114-19402149
          Length = 915

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +3

Query: 282 MYRVTDVESANVGPGGAVDQTCTPKSPQKKSDTNKTQHKSSAISPE 419
           ++RVTD +S N G  G  D   T ++ +   +   + HKSSA S +
Sbjct: 677 VHRVTDSKSMNTGTEGPRDAAGTLQN-RTSGELASSSHKSSATSAQ 721


>03_05_0990 -
           29503950-29504462,29504567-29504686,29514956-29515012,
           29515635-29515689,29515765-29515845,29515928-29515983,
           29516112-29516256,29516347-29516415,29517355-29517467,
           29517619-29517708,29518112-29518176,29519256-29519667
          Length = 591

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -3

Query: 325 PGPTFALSTSVTRYIFPS-SPVASPDDNGSTSGPHCLMKCPRRATR 191
           P P  +LST   +   P+ SP A  DD GS  G   L + P R  R
Sbjct: 30  PAPLRSLSTRWGKRSSPTASPPADSDDEGSPRGLSLLPRDPERPPR 75


>03_02_0390 + 8056006-8057502
          Length = 498

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -3

Query: 316 TFALSTSVTRYIFPSSPVASPDDNGSTSGPHCLMKCPRRATR*AGVV 176
           TF+  +S++   F SS   SP  + S+S PH  +    RA    GV+
Sbjct: 52  TFSARSSLSLPSFSSSTSLSPRPHSSSSSPHWALLAAARAATPDGVL 98


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,214,481
Number of Sequences: 37544
Number of extensions: 307324
Number of successful extensions: 867
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)