Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_P20
         (906 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37)                    36   0.034
SB_26376| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.55 
SB_17534| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.51)           30   3.0  
SB_41206| Best HMM Match : DGOK (HMM E-Value=8.1)                      29   3.9  
SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)             29   6.8  
SB_6481| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.8  
SB_35442| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.8  
SB_32866| Best HMM Match : Occludin_ELL (HMM E-Value=0.25)             28   9.0  

>SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37)
          Length = 712

 Score = 36.3 bits (80), Expect = 0.034
 Identities = 17/61 (27%), Positives = 36/61 (59%)
 Frame = +3

Query: 231 PDVLPLSSGLATGDDGKMYRVTDVESANVGPGGAVDQTCTPKSPQKKSDTNKTQHKSSAI 410
           P   PL SG +TG+  +  RVT +++ ++ P  ++++T TP S   ++ T+ T   ++ +
Sbjct: 604 PPPTPLISGRSTGEKAQHRRVTSLQADSLTPELSINKTITPTSGNDRTLTSDTPDDATPV 663

Query: 411 S 413
           +
Sbjct: 664 A 664


>SB_26376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1018

 Score = 32.3 bits (70), Expect = 0.55
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 150 RYCGGSHTVTTPAQRVARLGHFIKQWGPDVLPL 248
           R CGG HTVT+P +R AR   +      +V+P+
Sbjct: 744 RSCGGIHTVTSPHKRSARFNQYYYFRDDEVVPV 776


>SB_17534| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.51)
          Length = 976

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = +3

Query: 150 RYCGGSHTVTTPAQR-VARLGHF 215
           RYCGGSHT+  P +R V    HF
Sbjct: 829 RYCGGSHTIIHPLRRNVKSNSHF 851


>SB_41206| Best HMM Match : DGOK (HMM E-Value=8.1)
          Length = 295

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 321 PGGAVDQTCTPKSPQKKSDTNKTQHKSSAISPECRCL 431
           PGGA +  C P++PQ  + T   QH      P  + +
Sbjct: 11  PGGAAEYVCLPETPQYINYTPGHQHSGYMYGPSIKSM 47


>SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)
          Length = 3810

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 153  YCGGSHTVTTPAQRVARLGHFIKQWGPDVLPLSSG 257
            YC    +V+TPA    R+GHF     P+ +   +G
Sbjct: 2782 YCPAGQSVSTPAAFPCRVGHFCPGGSPEPVRCRNG 2816


>SB_6481| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 610

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -3

Query: 328 PPGPTFALSTSVTR-YIFPSSPVASPDDNGSTSGPH 224
           PP P+ ++S+ V+     PSSP +    NG TS PH
Sbjct: 88  PPSPSSSISSYVSMDSSLPSSPESQQLLNGQTSPPH 123


>SB_35442| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 121

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -1

Query: 207 RDEQRAEQESSPYENRHSSGCIDAYLT-PILVLVAVLSRVY 88
           R + + +Q+S  +EN+H  GC  +YLT P+ + +  L   Y
Sbjct: 58  RKDDKLQQDSGEHENQHGVGC--SYLTRPVFLKLFALGIEY 96


>SB_32866| Best HMM Match : Occludin_ELL (HMM E-Value=0.25)
          Length = 1034

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +3

Query: 231 PDVLPLSSGLATGDDGKMYRVTDVESANVGPGGAVDQTCTPK 356
           PD L  +  L+TGD+G++ R+ D +       G+  +T TP+
Sbjct: 291 PDSLDPTLWLSTGDEGRLKRIKDQQKDCKFRLGSSKETSTPQ 332


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,643,350
Number of Sequences: 59808
Number of extensions: 351767
Number of successful extensions: 1028
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2609867019
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)