Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_P20
         (906 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    23   5.1  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    23   5.1  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    22   6.7  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   6.7  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   6.7  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 419 MPMSGRKPSRKINKNYVKCENILYRTDFRNKTF 517
           M  SGR  S  + K+ + C   +Y+T+  N  F
Sbjct: 241 MMQSGRAKSEILYKSTLHCWATIYKTEGGNAFF 273


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 419 MPMSGRKPSRKINKNYVKCENILYRTDFRNKTF 517
           M  SGR  S  + K+ + C   +Y+T+  N  F
Sbjct: 241 MMQSGRAKSEILYKSTLHCWATIYKTEGGNAFF 273


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +3

Query: 312 NVGPGGAVDQTCTPKSPQKKSDTNKTQHKSSAISPECRC 428
           N+   G   +     S   ++ T+  QH SS  S E RC
Sbjct: 199 NIKKSGNESKKYATSSNSLRNRTHDFQHTSSRYSRERRC 237


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +3

Query: 87  DKHVTKQPPRPKSESDKHLCNRYCG 161
           +K V   PP       KHLC+  CG
Sbjct: 91  NKAVAPYPPNHPLSGSKHLCS-ICG 114


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +3

Query: 87  DKHVTKQPPRPKSESDKHLCNRYCG 161
           +K V   PP       KHLC+  CG
Sbjct: 91  NKAVAPYPPNHPLSGSKHLCS-ICG 114


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,241
Number of Sequences: 438
Number of extensions: 3061
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)