Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_P19
         (879 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g24220.1 68414.m03054 paired amphipathic helix repeat-contain...    31   0.77 
At3g02660.1 68416.m00257 tRNA synthetase class I (W and Y) famil...    30   1.8  
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu...    30   2.3  
At5g07390.1 68418.m00846 respiratory burst oxidase protein A (Rb...    29   4.1  
At1g68170.1 68414.m07787 nodulin MtN21 family protein similar to...    29   4.1  
At5g45050.2 68418.m05524 disease resistance protein-related simi...    29   5.4  
At5g45050.1 68418.m05523 disease resistance protein-related simi...    29   5.4  
At3g55480.2 68416.m06162 adaptin family protein similar to AP-3 ...    29   5.4  
At3g55480.1 68416.m06161 adaptin family protein similar to AP-3 ...    29   5.4  
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu...    28   7.2  
At3g20830.1 68416.m02634 protein kinase family protein contains ...    28   7.2  
At5g20380.1 68418.m02424 transporter-related low similarity to v...    28   9.5  
At1g71220.1 68414.m08219 UDP-glucose:glycoprotein glucosyltransf...    28   9.5  

>At1g24220.1 68414.m03054 paired amphipathic helix repeat-containing
           protein weak similarity to transcription co-repressor
           Sin3 [Xenopus laevis] GI:4960210; contains Pfam profile
           PF02671: Paired amphipathic helix repeat
          Length = 744

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
 Frame = -3

Query: 460 SCVIPLILWITVLPPLSELIPLAAAERPXXXXXXXXXXXXXQYANRLSPRVGRFI--NAE 287
           S  IP+ L IT++PP +     + A++P              + N+L P+  R I   AE
Sbjct: 260 SRTIPVKLKITIIPPKARRTIPSEADKP-------THTDELNFMNKLPPKRRRTIPSEAE 312

Query: 286 KTSHTSTLNLKHKM 245
           K +HT  LN  +K+
Sbjct: 313 KPTHTDELNFMNKL 326


>At3g02660.1 68416.m00257 tRNA synthetase class I (W and Y) family
           protein similar to SP|P00952 Tyrosyl-tRNA synthetase (EC
           6.1.1.1) (Tyrosine--tRNA ligase) (TyrRS) {Bacillus
           stearothermophilus}; contains Pfam profiles PF00579:
           tRNA synthetases class I (W and Y), PF01479: S4 domain
          Length = 511

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
 Frame = +3

Query: 522 RFSIGSAPLTSITKIDAQVR-GGETRQDYKDTRRFPLEAPSCALPVPTLPLTGILSAFLP 698
           RF  G   L    K    +R G ET+ D+    R   + PSC+LP+  +    I+   + 
Sbjct: 393 RFVHGEEGLKEAIKATEALRPGAETKLDWNLIERIAEDIPSCSLPIDRVSGLSIVDLSVS 452

Query: 699 SGSVAXSHSSR 731
           +G      ++R
Sbjct: 453 AGLFESKSAAR 463


>At4g35785.2 68417.m05083 transformer serine/arginine-rich
           ribonucleoprotein, putative similar to transformer-SR
           ribonucleoprotein [Nicotiana tabacum]
           gi|1781299|emb|CAA70700
          Length = 141

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = -2

Query: 677 PGKRQGRNRESARGSFQGETPGIFIVLSGFAT--SDLSVDFCDARQG 543
           P + +GR+R  +RG  + E PG  + ++G +T  +D  ++   A++G
Sbjct: 50  PSRSRGRSRSRSRGRSEVENPGTTLYVTGLSTRVTDKDLEAHFAKEG 96


>At5g07390.1 68418.m00846 respiratory burst oxidase protein A
           (RbohA) / NADPH oxidase identical to respiratory burst
           oxidase protein A from Arabidopsis thaliana [gi:3242781]
          Length = 902

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +2

Query: 539 RPPDEHHKNRRSSQRW 586
           RPPDEH  NR  S+ W
Sbjct: 667 RPPDEHRLNRADSKHW 682


>At1g68170.1 68414.m07787 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 356

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 20/46 (43%), Positives = 25/46 (54%)
 Frame = -3

Query: 526 KRQQRGLFTVPGLLLAFCSHVLSCVIPLILWITVLPPLSELIPLAA 389
           +R++R  FT   +LLA  S +L  VIP IL IT L   S     AA
Sbjct: 54  QRKKRPEFTCRLMLLALLSGLLGVVIPSILTITGLALTSATFTSAA 99


>At5g45050.2 68418.m05524 disease resistance protein-related similar
            to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
            profiles PF03106: WRKY DNA -binding domain, PF00931:
            NB-ARC domain, PF00560: Leucine Rich Repeat
          Length = 1344

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +2

Query: 347  PLPRSLTRCARSFGCGERYQLTQRR 421
            P PRS  RCA S GC  R Q+ + R
Sbjct: 1169 PYPRSYYRCASSKGCFARKQVERSR 1193


>At5g45050.1 68418.m05523 disease resistance protein-related similar
            to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
            profiles PF03106: WRKY DNA -binding domain, PF00931:
            NB-ARC domain, PF00560: Leucine Rich Repeat
          Length = 1372

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +2

Query: 347  PLPRSLTRCARSFGCGERYQLTQRR 421
            P PRS  RCA S GC  R Q+ + R
Sbjct: 1197 PYPRSYYRCASSKGCFARKQVERSR 1221


>At3g55480.2 68416.m06162 adaptin family protein similar to AP-3
            complex beta3A subunit, Homo sapiens, SP|O00203; contains
            Pfam profile: PF01602 Adaptin N terminal region
          Length = 987

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -3

Query: 493  GLLLAFCSHVLSCVIPLILWITVLPPLSELIPL 395
            GL L F S +LS  IPL++ ITV    +E++ L
Sbjct: 924  GLRLRFSSKILSSEIPLLITITVEGKCTEVLNL 956


>At3g55480.1 68416.m06161 adaptin family protein similar to AP-3
            complex beta3A subunit, Homo sapiens, SP|O00203; contains
            Pfam profile: PF01602 Adaptin N terminal region
          Length = 987

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -3

Query: 493  GLLLAFCSHVLSCVIPLILWITVLPPLSELIPL 395
            GL L F S +LS  IPL++ ITV    +E++ L
Sbjct: 924  GLRLRFSSKILSSEIPLLITITVEGKCTEVLNL 956


>At4g35785.1 68417.m05082 transformer serine/arginine-rich
           ribonucleoprotein, putative similar to transformer-SR
           ribonucleoprotein [Nicotiana tabacum]
           gi|1781299|emb|CAA70700
          Length = 140

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
 Frame = -2

Query: 677 PGKRQGRNRESARGSFQGETPGIFIVLSGFAT--SDLSVDFCDARQG 543
           P + +GR+R  +RGS + E PG  + ++G +T  +D  ++   A++G
Sbjct: 50  PSRSRGRSRSRSRGS-EVENPGTTLYVTGLSTRVTDKDLEAHFAKEG 95


>At3g20830.1 68416.m02634 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 408

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -2

Query: 338 PIRKPPLPARWPIH*CRKNLPHL 270
           P   PP P R P H CRKN P +
Sbjct: 384 PSSAPPSPLRSPPHVCRKNDPFI 406


>At5g20380.1 68418.m02424 transporter-related low similarity to
           vesicular glutamate transporter 3 [Rattus norvegicus]
           GI:21685382
          Length = 517

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = -3

Query: 511 GLFTVPGLLLAFCSHVLSCVIPLILWITVLPPLSELIPLAAAER 380
           G +T    L  + S  LS  +    W+++LPPL+ ++  + A +
Sbjct: 332 GHYTCLSWLPTYFSEALSLNLTEAAWVSILPPLASIVVTSLASQ 375


>At1g71220.1 68414.m08219 UDP-glucose:glycoprotein
            glucosyltransferase, putative similar to
            UDP-glucose:glycoprotein glucosyltransferase precursor
            GB:Q09332 [SP|Q09332] from Drosophila melanogaster,
            [gi:7670746] and [gi:11346464] from Homo sapiens
          Length = 1673

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 689  GGQYPGKRQGRNRESARGSFQGETPGIFIVLSG 591
            GG+    + G ++E  +G  QG+T  IF + SG
Sbjct: 1319 GGRQQSMKGGPDKEHEKGGRQGKTINIFSIASG 1351


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,941,181
Number of Sequences: 28952
Number of extensions: 368614
Number of successful extensions: 941
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2067932800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)