Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_P17
         (995 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)                 38   0.013
SB_812| Best HMM Match : FH2 (HMM E-Value=0)                           30   2.5  
SB_33909| Best HMM Match : FH2 (HMM E-Value=0)                         29   4.4  
SB_27885| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.051)          29   4.4  
SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.9  
SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30)                   29   7.8  
SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48)               29   7.8  

>SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)
          Length = 768

 Score = 37.9 bits (84), Expect = 0.013
 Identities = 21/49 (42%), Positives = 22/49 (44%)
 Frame = +1

Query: 181 PPGPVGSXLXXGXRPPPPXPXXGGGNXAPXKKKIXWXGGAPPPQXXNWG 327
           PP P G     G  PPPP P   GG   P    I   GGAPPP    +G
Sbjct: 664 PPPPPGGQA--GGAPPPPPPPLPGGAAPPPPPPI--GGGAPPPPPPGFG 708



 Score = 31.1 bits (67), Expect = 1.5
 Identities = 14/32 (43%), Positives = 14/32 (43%)
 Frame = +1

Query: 214 GXRPPPPXPXXGGGNXAPXKKKIXWXGGAPPP 309
           G  PPPP P  G    AP        GGA PP
Sbjct: 659 GPPPPPPPPPGGQAGGAPPPPPPPLPGGAAPP 690



 Score = 29.1 bits (62), Expect = 5.9
 Identities = 21/58 (36%), Positives = 21/58 (36%)
 Frame = -1

Query: 326 PQXXXWGGGAPPNQXIFFXXGAXFPPPXXGXGGGGRXPYXKXEPTGPGGXXEXXXPXK 153
           P      GGAPP        GA  PPP    GGG   P     P G GG      P K
Sbjct: 666 PPPGGQAGGAPPPPPPPLPGGAA-PPPPPPIGGGAPPP----PPPGFGGFANLVKPRK 718


>SB_812| Best HMM Match : FH2 (HMM E-Value=0)
          Length = 1430

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 15/31 (48%), Positives = 15/31 (48%)
 Frame = +1

Query: 181 PPGPVGSXLXXGXRPPPPXPXXGGGNXAPXK 273
           PP P G     G  PPPP P  GGG   P K
Sbjct: 653 PPPPPGG----GMFPPPPPPPPGGGVPGPPK 679


>SB_33909| Best HMM Match : FH2 (HMM E-Value=0)
          Length = 1063

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 15/43 (34%), Positives = 16/43 (37%)
 Frame = +1

Query: 181 PPGPVGSXLXXGXRPPPPXPXXGGGNXAPXKKKIXWXGGAPPP 309
           PP P+ S       PPPP P    G   P         G PPP
Sbjct: 700 PPPPLLSGTLPMPPPPPPPPPGCAGLPPPPPSPQPGCAGLPPP 742


>SB_27885| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.051)
          Length = 421

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 17/44 (38%), Positives = 18/44 (40%)
 Frame = +1

Query: 181 PPGPVGSXLXXGXRPPPPXPXXGGGNXAPXKKKIXWXGGAPPPQ 312
           PPG        G  PPP  P  GGG   P +        APPPQ
Sbjct: 192 PPGGYQQPPPGGYAPPPYVPQEGGG--IPPQNHPLTNYPAPPPQ 233


>SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 964

 Score = 29.1 bits (62), Expect = 5.9
 Identities = 17/49 (34%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
 Frame = +1

Query: 187 GPVGSXLXXGXRPPPPXPXXGGGNXAPXKKKIXWXGGAPPP-QXXNWGE 330
           GP       G   PPP    GGG   P   +    GG PPP     WG+
Sbjct: 513 GPPPPGAGQGWGQPPPGAGQGGGPPPPGAGQ---GGGPPPPGAGQGWGQ 558



 Score = 28.7 bits (61), Expect = 7.8
 Identities = 20/57 (35%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
 Frame = -1

Query: 326 PQXXXWGGGAPPNQXIFFXXGAXFPPPXXGXGGGGRXP-YXKXEPTGPGGXXEXXXP 159
           P     GGG PP        G   PPP  G GGG   P   +  P  PG   E   P
Sbjct: 538 PPGAGQGGGPPPPGA---GQGWGQPPPGAGQGGGPPPPGAGQGGPPPPGAGQEGPPP 591


>SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30)
          Length = 739

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 15/35 (42%), Positives = 16/35 (45%)
 Frame = +1

Query: 223 PPPPXPXXGGGNXAPXKKKIXWXGGAPPPQXXNWG 327
           PPPP P  G    AP      +  GAPPP   N G
Sbjct: 197 PPPPPPPPGFPGGAPPPPPPPF--GAPPPPALNGG 229


>SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48)
          Length = 341

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 13/36 (36%), Positives = 14/36 (38%)
 Frame = +1

Query: 160 GXXXSXXPPGPVGSXLXXGXRPPPPXPXXGGGNXAP 267
           G   +  PP P G        PPPP P  GG    P
Sbjct: 299 GSAPAPPPPPPPGGAPPPPPPPPPPPPGDGGAPPPP 334


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,268,502
Number of Sequences: 59808
Number of extensions: 155949
Number of successful extensions: 391
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 337
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2967383049
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)