Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_P17
(995 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 35 0.10
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 35 0.10
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 35 0.10
Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical pr... 34 0.18
L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein. 34 0.18
Z82268-5|CAB05195.1| 304|Caenorhabditis elegans Hypothetical pr... 31 1.3
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 31 1.7
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 31 1.7
Z79596-2|CAC42251.1| 838|Caenorhabditis elegans Hypothetical pr... 29 5.2
AL032627-19|CAD66222.1| 309|Caenorhabditis elegans Hypothetical... 29 5.2
AF167982-1|AAD50438.1| 838|Caenorhabditis elegans dynamin protein. 29 5.2
AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen prot... 29 5.2
AC024809-7|AAF59540.1| 315|Caenorhabditis elegans Hypothetical ... 29 5.2
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 6.8
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 6.8
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 6.8
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 28 9.0
Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical pr... 28 9.0
Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical pr... 28 9.0
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 28 9.0
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 34.7 bits (76), Expect = 0.10
Identities = 17/43 (39%), Positives = 18/43 (41%)
Frame = +1
Query: 181 PPGPVGSXLXXGXRPPPPXPXXGGGNXAPXKKKIXWXGGAPPP 309
PP P G G PPPP P G P + GG PPP
Sbjct: 745 PPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPP 787
Score = 33.1 bits (72), Expect = 0.32
Identities = 16/43 (37%), Positives = 16/43 (37%)
Frame = +1
Query: 181 PPGPVGSXLXXGXRPPPPXPXXGGGNXAPXKKKIXWXGGAPPP 309
PP P G PPPP P GG P G PPP
Sbjct: 744 PPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPP 786
Score = 28.7 bits (61), Expect = 6.8
Identities = 17/48 (35%), Positives = 18/48 (37%), Gaps = 5/48 (10%)
Frame = +1
Query: 181 PPGPVGSXLXXGXRPPPP-----XPXXGGGNXAPXKKKIXWXGGAPPP 309
PP P G G PPPP P GG P + G PPP
Sbjct: 713 PPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPP 760
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 34.7 bits (76), Expect = 0.10
Identities = 17/43 (39%), Positives = 18/43 (41%)
Frame = +1
Query: 181 PPGPVGSXLXXGXRPPPPXPXXGGGNXAPXKKKIXWXGGAPPP 309
PP P G G PPPP P G P + GG PPP
Sbjct: 745 PPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPP 787
Score = 33.1 bits (72), Expect = 0.32
Identities = 16/43 (37%), Positives = 16/43 (37%)
Frame = +1
Query: 181 PPGPVGSXLXXGXRPPPPXPXXGGGNXAPXKKKIXWXGGAPPP 309
PP P G PPPP P GG P G PPP
Sbjct: 744 PPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPP 786
Score = 28.7 bits (61), Expect = 6.8
Identities = 17/48 (35%), Positives = 18/48 (37%), Gaps = 5/48 (10%)
Frame = +1
Query: 181 PPGPVGSXLXXGXRPPPP-----XPXXGGGNXAPXKKKIXWXGGAPPP 309
PP P G G PPPP P GG P + G PPP
Sbjct: 713 PPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPP 760
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 34.7 bits (76), Expect = 0.10
Identities = 17/43 (39%), Positives = 18/43 (41%)
Frame = +1
Query: 181 PPGPVGSXLXXGXRPPPPXPXXGGGNXAPXKKKIXWXGGAPPP 309
PP P G G PPPP P G P + GG PPP
Sbjct: 328 PPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPP 370
Score = 33.1 bits (72), Expect = 0.32
Identities = 16/43 (37%), Positives = 16/43 (37%)
Frame = +1
Query: 181 PPGPVGSXLXXGXRPPPPXPXXGGGNXAPXKKKIXWXGGAPPP 309
PP P G PPPP P GG P G PPP
Sbjct: 327 PPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPP 369
Score = 28.7 bits (61), Expect = 6.8
Identities = 17/48 (35%), Positives = 18/48 (37%), Gaps = 5/48 (10%)
Frame = +1
Query: 181 PPGPVGSXLXXGXRPPPP-----XPXXGGGNXAPXKKKIXWXGGAPPP 309
PP P G G PPPP P GG P + G PPP
Sbjct: 296 PPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPP 343
>Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical
protein C02C6.1a protein.
Length = 830
Score = 33.9 bits (74), Expect = 0.18
Identities = 17/42 (40%), Positives = 18/42 (42%)
Frame = +1
Query: 181 PPGPVGSXLXXGXRPPPPXPXXGGGNXAPXKKKIXWXGGAPP 306
P G G+ G RPPP P GGG P GG PP
Sbjct: 783 PRGGPGAPPPPGMRPPPGAPGGGGGMYPPLIPTRPGPGGPPP 824
Score = 29.1 bits (62), Expect = 5.2
Identities = 19/59 (32%), Positives = 22/59 (37%)
Frame = -1
Query: 329 SPQXXXWGGGAPPNQXIFFXXGAXFPPPXXGXGGGGRXPYXKXEPTGPGGXXEXXXPXK 153
+P G GAPP + PPP GGGG P GPGG P +
Sbjct: 779 APMPPRGGPGAPPPPGMR-------PPPGAPGGGGGMYPPLIPTRPGPGGPPPNMAPPR 830
>L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein.
Length = 830
Score = 33.9 bits (74), Expect = 0.18
Identities = 17/42 (40%), Positives = 18/42 (42%)
Frame = +1
Query: 181 PPGPVGSXLXXGXRPPPPXPXXGGGNXAPXKKKIXWXGGAPP 306
P G G+ G RPPP P GGG P GG PP
Sbjct: 783 PRGGPGAPPPPGMRPPPGAPGGGGGMYPPLIPTRPGPGGPPP 824
Score = 29.1 bits (62), Expect = 5.2
Identities = 19/59 (32%), Positives = 22/59 (37%)
Frame = -1
Query: 329 SPQXXXWGGGAPPNQXIFFXXGAXFPPPXXGXGGGGRXPYXKXEPTGPGGXXEXXXPXK 153
+P G GAPP + PPP GGGG P GPGG P +
Sbjct: 779 APMPPRGGPGAPPPPGMR-------PPPGAPGGGGGMYPPLIPTRPGPGGPPPNMAPPR 830
>Z82268-5|CAB05195.1| 304|Caenorhabditis elegans Hypothetical
protein F52B11.4 protein.
Length = 304
Score = 31.1 bits (67), Expect = 1.3
Identities = 20/53 (37%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Frame = +1
Query: 181 PPGPVGSXLXXGXRPPPPXPXXGGGNXAPXKKKIXWXGGAP--PPQXXNWGEK 333
PPGP GS G P P G + AP + GAP P Q GEK
Sbjct: 230 PPGPAGSPGAPGGPGQPGAPGQKGPSGAPGQPGADGNPGAPGQPGQAGGAGEK 282
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 30.7 bits (66), Expect = 1.7
Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Frame = +1
Query: 184 PGPVGSXLXXGXRPPPPXPXXG----GGNXAPXKKKIXWXGGAPPP 309
PGP G G PPPP G GG P + + GG PPP
Sbjct: 308 PGPPGMP---GMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPP 350
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 30.7 bits (66), Expect = 1.7
Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Frame = +1
Query: 184 PGPVGSXLXXGXRPPPPXPXXG----GGNXAPXKKKIXWXGGAPPP 309
PGP G G PPPP G GG P + + GG PPP
Sbjct: 318 PGPPGMP---GMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPP 360
>Z79596-2|CAC42251.1| 838|Caenorhabditis elegans Hypothetical
protein C02C6.1b protein.
Length = 838
Score = 29.1 bits (62), Expect = 5.2
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +1
Query: 181 PPGPVGSXLXXGXRPPPPXPXXGGGNXAP 267
P G G+ G RPPP P GGG P
Sbjct: 783 PRGGPGAPPPPGMRPPPGAPGGGGGMYPP 811
>AL032627-19|CAD66222.1| 309|Caenorhabditis elegans Hypothetical
protein Y41C4A.16 protein.
Length = 309
Score = 29.1 bits (62), Expect = 5.2
Identities = 16/41 (39%), Positives = 17/41 (41%)
Frame = +1
Query: 181 PPGPVGSXLXXGXRPPPPXPXXGGGNXAPXKKKIXWXGGAP 303
PPG GS G P P GGG+ AP GAP
Sbjct: 162 PPGAPGSPGPQGNAGAPGQPGHGGGSGAPGPAGPKGQRGAP 202
>AF167982-1|AAD50438.1| 838|Caenorhabditis elegans dynamin protein.
Length = 838
Score = 29.1 bits (62), Expect = 5.2
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +1
Query: 181 PPGPVGSXLXXGXRPPPPXPXXGGGNXAP 267
P G G+ G RPPP P GGG P
Sbjct: 783 PRGGPGAPPPPGMRPPPGAPGGGGGMYPP 811
>AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen protein
103 protein.
Length = 371
Score = 29.1 bits (62), Expect = 5.2
Identities = 15/41 (36%), Positives = 16/41 (39%)
Frame = +1
Query: 181 PPGPVGSXLXXGXRPPPPXPXXGGGNXAPXKKKIXWXGGAP 303
PPGP G G P P GGG AP G+P
Sbjct: 192 PPGPAGQAGRPGNDGQPGAPSFGGGVGAPGAPGPAGDAGSP 232
>AC024809-7|AAF59540.1| 315|Caenorhabditis elegans Hypothetical
protein Y53G8AR.9 protein.
Length = 315
Score = 29.1 bits (62), Expect = 5.2
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +1
Query: 187 GPVGSXLXXGXRPPPPXPXXGGGNXAP 267
G GS G PPPP P GGG P
Sbjct: 200 GSGGSGGGSGRFPPPPPPYGGGGRRRP 226
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.7 bits (61), Expect = 6.8
Identities = 15/44 (34%), Positives = 16/44 (36%)
Frame = +1
Query: 181 PPGPVGSXLXXGXRPPPPXPXXGGGNXAPXKKKIXWXGGAPPPQ 312
PP P GS PP P G P + G PPPQ
Sbjct: 273 PPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQ 316
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 28.7 bits (61), Expect = 6.8
Identities = 15/44 (34%), Positives = 16/44 (36%)
Frame = +1
Query: 181 PPGPVGSXLXXGXRPPPPXPXXGGGNXAPXKKKIXWXGGAPPPQ 312
PP P GS PP P G P + G PPPQ
Sbjct: 294 PPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQ 337
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.7 bits (61), Expect = 6.8
Identities = 15/44 (34%), Positives = 16/44 (36%)
Frame = +1
Query: 181 PPGPVGSXLXXGXRPPPPXPXXGGGNXAPXKKKIXWXGGAPPPQ 312
PP P GS PP P G P + G PPPQ
Sbjct: 279 PPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQ 322
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
protein F15B9.4 protein.
Length = 1140
Score = 28.3 bits (60), Expect = 9.0
Identities = 17/43 (39%), Positives = 18/43 (41%)
Frame = +1
Query: 181 PPGPVGSXLXXGXRPPPPXPXXGGGNXAPXKKKIXWXGGAPPP 309
PP PVG G PPPP P K + GG PPP
Sbjct: 540 PPPPVGMA-NGGPPPPPPLPLDLLKGAVAGLKSV--PGGPPPP 579
>Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical
protein C33B4.3b protein.
Length = 993
Score = 28.3 bits (60), Expect = 9.0
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +1
Query: 172 SXXPPGPVGSXLXXGXRPPPPXPXXGG 252
S PP P + G PPPP P GG
Sbjct: 792 SVPPPPPPLPPISSGAPPPPPPPPPGG 818
>Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical
protein C33B4.3a protein.
Length = 1110
Score = 28.3 bits (60), Expect = 9.0
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +1
Query: 172 SXXPPGPVGSXLXXGXRPPPPXPXXGG 252
S PP P + G PPPP P GG
Sbjct: 792 SVPPPPPPLPPISSGAPPPPPPPPPGG 818
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 28.3 bits (60), Expect = 9.0
Identities = 17/53 (32%), Positives = 20/53 (37%), Gaps = 7/53 (13%)
Frame = +1
Query: 172 SXXPPGPV-------GSXLXXGXRPPPPXPXXGGGNXAPXKKKIXWXGGAPPP 309
S PP P+ G+ + PPPP P G P GG PPP
Sbjct: 540 SIPPPPPIAGLLAANGTNVPIPPPPPPPLPQNLSGAPPPPPPPPPMLGGPPPP 592
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,525,163
Number of Sequences: 27780
Number of extensions: 163538
Number of successful extensions: 717
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2605097262
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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