Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_P17
         (995 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g03120.1 68417.m00425 proline-rich family protein similar to ...    31   1.6  
At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family...    30   2.1  
At1g61080.1 68414.m06877 proline-rich family protein                   29   4.1  

>At4g03120.1 68417.m00425 proline-rich family protein similar to U1
           small nuclear ribonucleoprotein C; contains proline rich
           extensin domains, INTERPRO:IPR002965
          Length = 207

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 17/43 (39%), Positives = 17/43 (39%)
 Frame = +1

Query: 181 PPGPVGSXLXXGXRPPPPXPXXGGGNXAPXKKKIXWXGGAPPP 309
           PP P    L    RPP   P  G G   P    I   GG PPP
Sbjct: 127 PPPPQNGIL----RPPGMAPIPGQGGGPPGMAPIPGQGGGPPP 165


>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
           protein Common family members: At4g18570, At4g04980,
           At5g61090 [Arabidopsis thaliana];  identical to cDNA
           CHUP1 for actin binding protein GI:28071264
          Length = 1004

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 15/32 (46%), Positives = 15/32 (46%)
 Frame = +1

Query: 214 GXRPPPPXPXXGGGNXAPXKKKIXWXGGAPPP 309
           G  PPPP P  GGG   P        GG PPP
Sbjct: 676 GGGPPPPPPPPGGGPPPP-------PGGGPPP 700



 Score = 28.3 bits (60), Expect = 8.4
 Identities = 13/37 (35%), Positives = 14/37 (37%)
 Frame = +3

Query: 219 PXPPPXPXXGGXEXXXXXKKNXLVXWSPPPPXXXLGG 329
           P PPP    GG        +  L    PPPP    GG
Sbjct: 652 PRPPPRSAGGGKSTNLPSARPPLPGGGPPPPPPPPGG 688


>At1g61080.1 68414.m06877 proline-rich family protein 
          Length = 907

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 18/49 (36%), Positives = 20/49 (40%), Gaps = 6/49 (12%)
 Frame = +1

Query: 181 PPGPVGSXLXXGXRPPPPXPXXGGGNXA----PXKKKIXWXGGA--PPP 309
           PP P    L  G  PPPP P     N A    P   ++    GA  PPP
Sbjct: 591 PPPPPPMPLANGATPPPPPPPMAMANGAAGPPPPPPRMGMANGAAGPPP 639



 Score = 24.6 bits (51), Expect(2) = 4.1
 Identities = 11/29 (37%), Positives = 11/29 (37%)
 Frame = +1

Query: 223 PPPPXPXXGGGNXAPXKKKIXWXGGAPPP 309
           PPPP P  G     P          APPP
Sbjct: 536 PPPPPPPPGTAAAPPPPPPPPGTQAAPPP 564



 Score = 23.0 bits (47), Expect(2) = 4.1
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = +1

Query: 181 PPGPVGSXLXXGXRPPPPXP 240
           PP P       G  PPPP P
Sbjct: 494 PPTPPAFKPLKGSAPPPPPP 513


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,035,877
Number of Sequences: 28952
Number of extensions: 171118
Number of successful extensions: 429
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 374
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2431362000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)