Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_P14
(881 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g60245.1 68416.m06733 60S ribosomal protein L37a (RPL37aC) 117 9e-27
At3g10950.1 68416.m01320 60S ribosomal protein L37a (RPL37aB) si... 117 1e-26
At3g48080.1 68416.m05242 lipase class 3 family protein / disease... 29 5.4
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 29 5.4
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 28 9.5
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 28 9.5
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 28 9.5
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 28 9.5
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 28 9.5
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 28 9.5
>At3g60245.1 68416.m06733 60S ribosomal protein L37a (RPL37aC)
Length = 92
Score = 117 bits (282), Expect = 9e-27
Identities = 49/83 (59%), Positives = 64/83 (77%)
Frame = +3
Query: 105 KRLELLGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRCKRTVA 284
K++ ++GKYGTRYGAS+RK +KKMEV+QH+KY C FCGK +KR VGIW CK C + A
Sbjct: 6 KKVGIVGKYGTRYGASIRKQIKKMEVSQHSKYFCEFCGKYGVKRKAVGIWGCKDCGKVKA 65
Query: 285 GGAWVFSTTAASSCRSAVRRLRE 353
GGA+ +T +A + RS +RRLRE
Sbjct: 66 GGAYTMNTASAVTVRSTIRRLRE 88
>At3g10950.1 68416.m01320 60S ribosomal protein L37a (RPL37aB)
similar to putative 60S ribosomal protein L37a
GB:AAD28753 [Gossypium hirsutum]
Length = 92
Score = 117 bits (281), Expect = 1e-26
Identities = 50/83 (60%), Positives = 63/83 (75%)
Frame = +3
Query: 105 KRLELLGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRCKRTVA 284
K+ ++GKYGTRYGASLRK +KKMEV+QH KY C FCGK ++KR VGIW CK C + A
Sbjct: 6 KKARIVGKYGTRYGASLRKQIKKMEVSQHNKYFCEFCGKYSVKRKVVGIWGCKDCGKVKA 65
Query: 285 GGAWVFSTTAASSCRSAVRRLRE 353
GGA+ +T +A + RS +RRLRE
Sbjct: 66 GGAYTMNTASAVTVRSTIRRLRE 88
>At3g48080.1 68416.m05242 lipase class 3 family protein / disease
resistance protein-related similar to disease resistance
protein/lipase homolog EDS1 GI:4454567; contains Pfam
profile PF01764: Lipase
Length = 629
Score = 28.7 bits (61), Expect = 5.4
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 76 EVYQNGQTYQKGWNYLANMAHVTVPLY 156
E++ G T++K WN L + + PLY
Sbjct: 591 EIFLEGSTFRKWWNTLPDSHKIHAPLY 617
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +3
Query: 714 AVCXLGALPXPRXLTXCPRSFGCGXRYQPP 803
AV + A + + CP F CG YQPP
Sbjct: 331 AVAAIKAKRTIQFVDWCPTGFKCGINYQPP 360
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 27.9 bits (59), Expect = 9.5
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +3
Query: 762 CPRSFGCGXRYQPP 803
CP F CG YQPP
Sbjct: 347 CPTGFKCGINYQPP 360
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 27.9 bits (59), Expect = 9.5
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +3
Query: 762 CPRSFGCGXRYQPP 803
CP F CG YQPP
Sbjct: 347 CPTGFKCGINYQPP 360
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 27.9 bits (59), Expect = 9.5
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +3
Query: 762 CPRSFGCGXRYQPP 803
CP F CG YQPP
Sbjct: 347 CPTGFKCGINYQPP 360
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 27.9 bits (59), Expect = 9.5
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +3
Query: 762 CPRSFGCGXRYQPP 803
CP F CG YQPP
Sbjct: 347 CPTGFKCGINYQPP 360
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 27.9 bits (59), Expect = 9.5
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +3
Query: 762 CPRSFGCGXRYQPP 803
CP F CG YQPP
Sbjct: 347 CPTGFKCGINYQPP 360
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 27.9 bits (59), Expect = 9.5
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +3
Query: 762 CPRSFGCGXRYQPP 803
CP F CG YQPP
Sbjct: 347 CPTGFKCGINYQPP 360
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,682,684
Number of Sequences: 28952
Number of extensions: 234181
Number of successful extensions: 606
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2077687200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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