Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_P13
         (918 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ...    74   4e-12
UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular organi...    69   2e-10
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    66   9e-10
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    46   0.001
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h...    45   0.002
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    36   1.9  
UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1; ...    35   2.5  
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    34   5.9  

>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
           root|Rep: Putative uncharacterized protein - Salmonella
           typhimurium
          Length = 127

 Score = 74.1 bits (174), Expect = 4e-12
 Identities = 35/43 (81%), Positives = 35/43 (81%)
 Frame = +2

Query: 611 RFSIXSXPLTXIXKIDAQVRGGETRQDYKDTRXFPRXXPSCAL 739
           RFSI S PLT I KIDAQVRGGETRQDYKDTR FP   PSCAL
Sbjct: 15  RFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCAL 57


>UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular
           organisms|Rep: Predicted protein - Nematostella
           vectensis
          Length = 97

 Score = 68.9 bits (161), Expect = 2e-10
 Identities = 32/43 (74%), Positives = 33/43 (76%)
 Frame = +2

Query: 611 RFSIXSXPLTXIXKIDAQVRGGETRQDYKDTRXFPRXXPSCAL 739
           RFSI S PLT I K DAQ+ GGETRQDYKDTR FP   PSCAL
Sbjct: 51  RFSIGSAPLTSITKSDAQISGGETRQDYKDTRRFPLAAPSCAL 93


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 66.5 bits (155), Expect = 9e-10
 Identities = 31/43 (72%), Positives = 32/43 (74%)
 Frame = +2

Query: 611 RFSIXSXPLTXIXKIDAQVRGGETRQDYKDTRXFPRXXPSCAL 739
           RFSI S PLT I K DAQ+ GGETRQDYKD R FP   PSCAL
Sbjct: 83  RFSIGSAPLTSIAKSDAQISGGETRQDYKDPRRFPLVAPSCAL 125



 Score = 42.3 bits (95), Expect = 0.017
 Identities = 20/33 (60%), Positives = 22/33 (66%)
 Frame = +1

Query: 403 RGEAVCVLGALPLPRSLTXXARSXGGGERYXLT 501
           R   +C  G +PLPRSLT  ARS G GERY LT
Sbjct: 26  RVSRICDTGDIPLPRSLTRYARSFGCGERYRLT 58


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 46.4 bits (105), Expect = 0.001
 Identities = 19/22 (86%), Positives = 19/22 (86%)
 Frame = +2

Query: 386 MNRPTRGERRFAYWAXFXFPAH 451
           MNRPTRGERRFAYWA F F AH
Sbjct: 28  MNRPTRGERRFAYWALFRFLAH 49


>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
           Alpha-hemolysin - Aeromonas hydrophila
          Length = 59

 Score = 45.2 bits (102), Expect = 0.002
 Identities = 26/41 (63%), Positives = 26/41 (63%)
 Frame = +3

Query: 435 SXSPLTDSLRSVXXGGGAVSXHSKAVXPPXXEXGDNAGXNM 557
           S S LTDSLRSV     AVS HSKAV     E GDNAG NM
Sbjct: 19  SASSLTDSLRSVVRLRRAVSAHSKAVIRLSTESGDNAGKNM 59


>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 35.5 bits (78), Expect = 1.9
 Identities = 25/54 (46%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +1

Query: 388 ESANARGEAVCVLGALPLPRSLTXXARSXG-GGERYXLTQRR*XPXPQXXGITQ 546
           + A AR EAV VL ALPL RS T   RS G GG     +  R    PQ  G+ Q
Sbjct: 269 DPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGMAQ 322


>UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1;
           Beggiatoa sp. SS|Rep: Putative uncharacterized protein -
           Beggiatoa sp. SS
          Length = 114

 Score = 35.1 bits (77), Expect = 2.5
 Identities = 18/42 (42%), Positives = 23/42 (54%)
 Frame = +2

Query: 614 FSIXSXPLTXIXKIDAQVRGGETRQDYKDTRXFPRXXPSCAL 739
           F   S PLT I KI  Q +  +T+ +YK T  FP   PS +L
Sbjct: 69  FPYNSPPLTTITKIYPQFKNTQTQHNYKYTTPFPLQSPSYSL 110


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 33.9 bits (74), Expect = 5.9
 Identities = 15/15 (100%), Positives = 15/15 (100%)
 Frame = -2

Query: 431 APNTQTASPRALADS 387
           APNTQTASPRALADS
Sbjct: 331 APNTQTASPRALADS 345


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 473,976,760
Number of Sequences: 1657284
Number of extensions: 6025508
Number of successful extensions: 8630
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8629
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 84031265255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)