Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_P13
         (918 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450 ...    23   2.5  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    23   4.4  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    23   4.4  

>AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 505

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 205 NVSYXPMDPINPXINGRMP 149
           ++SY P  P+N  I+G +P
Sbjct: 35  SLSYLPGPPVNDIISGNIP 53


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 424 IRKPPLPARWPIHFFRKTSXSS 359
           + +PP PAR P  + +KTS  S
Sbjct: 114 VARPP-PARSPYEWIKKTSYQS 134


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 424 IRKPPLPARWPIHFFRKTSXSS 359
           + +PP PAR P  + +KTS  S
Sbjct: 114 VARPP-PARSPYEWIKKTSYQS 134


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,967
Number of Sequences: 336
Number of extensions: 1486
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25651384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)