Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_P12
         (983 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    46   0.001
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    44   0.005
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    41   0.056
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    39   0.23 
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    38   0.52 
UniRef50_A6DNS7 Cluster: Probable ECF sigma factor; n=1; Lentisp...    34   4.9  

>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 46.4 bits (105), Expect = 0.001
 Identities = 22/35 (62%), Positives = 23/35 (65%)
 Frame = +1

Query: 670 CINESANXRGEAVCVLGALPFPRSLTRCARSFGCG 774
           CI + A  R EAV VL ALP  RS TRC RS GCG
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCG 300


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 44.4 bits (100), Expect = 0.005
 Identities = 19/29 (65%), Positives = 21/29 (72%)
 Frame = +1

Query: 694 RGEAVCVLGALPFPRSLTRCARSFGCGER 780
           R   +C  G +P PRSLTR ARSFGCGER
Sbjct: 26  RVSRICDTGDIPLPRSLTRYARSFGCGER 54


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 40.7 bits (91), Expect = 0.056
 Identities = 16/17 (94%), Positives = 17/17 (100%)
 Frame = +2

Query: 668 SALMNRPTRGERRFAYW 718
           +ALMNRPTRGERRFAYW
Sbjct: 25  AALMNRPTRGERRFAYW 41


>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 38.7 bits (86), Expect = 0.23
 Identities = 16/19 (84%), Positives = 17/19 (89%)
 Frame = +2

Query: 473 DPXMIXYIDEFGQTTTKMQ 529
           DP MI YIDEFGQTTT+MQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 37.5 bits (83), Expect = 0.52
 Identities = 17/18 (94%), Positives = 17/18 (94%)
 Frame = -1

Query: 722 APNTQTASPRXLADSLMQ 669
           APNTQTASPR LADSLMQ
Sbjct: 331 APNTQTASPRALADSLMQ 348


>UniRef50_A6DNS7 Cluster: Probable ECF sigma factor; n=1;
           Lentisphaera araneosa HTCC2155|Rep: Probable ECF sigma
           factor - Lentisphaera araneosa HTCC2155
          Length = 201

 Score = 34.3 bits (75), Expect = 4.9
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +2

Query: 551 EIGDAIALFVTIISCNKQVNNNNCIHFMFQVQGEVWEVFSALMNRPTRGERRFAYW 718
           +  DA   F+ I   N  +N+++C   + +V  +VWE  +     P RG  +F YW
Sbjct: 32  DFSDAYRRFIYIALRNNGLNHHDCEEVVQRVMIKVWEKIARFKYNPGRG--KFRYW 85


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 554,480,932
Number of Sequences: 1657284
Number of extensions: 7710046
Number of successful extensions: 16274
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16269
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 92264799902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)