Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_P12
         (983 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g15290.1 68414.m01830 tetratricopeptide repeat (TPR)-containi...    29   6.3  

>At1g15290.1 68414.m01830 tetratricopeptide repeat (TPR)-containing
           protein ESTs gb|F20110 and gb|F20109 come from this
           gene; contains Pfam profile PF00515: TPR Domain
          Length = 1558

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -2

Query: 553 FTNKAFFSLHFSCGLS 506
           + N+A F LHF+CGLS
Sbjct: 904 YVNRALFLLHFTCGLS 919


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,891,745
Number of Sequences: 28952
Number of extensions: 166799
Number of successful extensions: 315
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 315
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2392460208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)