Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_P11
         (1006 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    29   1.0  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.0  
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    27   3.2  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   5.5  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   9.6  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 20/76 (26%), Positives = 23/76 (30%), Gaps = 1/76 (1%)
 Frame = -1

Query: 586 PAPHXPXRXTSPXXRXXPGGPXXPXPXPXRGXXAX-RAPXXPGAXXPPERXKXQTAPPPX 410
           PAP  P     P     P  P  P P P        +AP  P +  PP +       PP 
Sbjct: 128 PAPPTPQSELRPPTSAPPR-PSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPS 186

Query: 409 XRXTXXXRXPXXPXQP 362
                    P  P  P
Sbjct: 187 APSLPSAVPPMPPKVP 202


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = -3

Query: 587 PXPPPAPXQXKPXXPXXPGGAAXXAXXP 504
           P PPPAP    P  P  P G A     P
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPP 777


>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +1

Query: 91  KKKKKXXKK*KXKK*KKXKKXKKK 162
           ++KK+  K+ K KK KK KK KKK
Sbjct: 448 RRKKEAKKEKKEKKEKKEKKEKKK 471


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 15/42 (35%), Positives = 15/42 (35%)
 Frame = -3

Query: 587  PXPPPAPXQXKPXXPXXPGGAAXXAXXPXAGAXGAPSTXXXG 462
            P PPP      P  P  P G    A  P   A  APS    G
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAG-PPSAPPPPLPASSAPSVPNPG 1747


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 20/78 (25%), Positives = 20/78 (25%), Gaps = 6/78 (7%)
 Frame = -1

Query: 586 PAPHXPXRXTSPXXRXXPGGPXXPXPXPXRGXXAXRAPXXP----GAXXPPERXKXQTA- 422
           P P    R   P           P P P R   A   P  P        PP R    T  
Sbjct: 315 PPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGR 374

Query: 421 -PPPXXRXTXXXRXPXXP 371
            PPP          P  P
Sbjct: 375 QPPPLSSSRAVSNPPAPP 392


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,213,450
Number of Sequences: 5004
Number of extensions: 10854
Number of successful extensions: 33
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 521265546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)