Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_P11
(1006 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50227| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.003
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.030
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10) 35 0.091
SB_14664| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.21
SB_42837| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.28
SB_37029| Best HMM Match : 7tm_1 (HMM E-Value=4.2039e-45) 33 0.37
SB_32355| Best HMM Match : Laminin_EGF (HMM E-Value=0) 33 0.37
SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.37
SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.64
SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1) 31 1.5
SB_58050| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.5
SB_36647| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.9
SB_30371| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.6
SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.4
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05) 29 4.5
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013) 29 4.5
SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33) 29 4.5
SB_50768| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.9
SB_47673| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.9
SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.9
SB_59302| Best HMM Match : Collagen (HMM E-Value=0) 29 7.9
>SB_50227| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 276
Score = 39.9 bits (89), Expect = 0.003
Identities = 23/44 (52%), Positives = 23/44 (52%)
Frame = +1
Query: 61 PDKXT*SHXXKKKKKXXKK*KXKK*KKXKKXKKKXXXXKKKXXK 192
P T KKKKK KK K KK KK KK KKK KKK K
Sbjct: 144 PQPPTKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK 187
Score = 39.5 bits (88), Expect = 0.004
Identities = 23/44 (52%), Positives = 23/44 (52%)
Frame = +1
Query: 61 PDKXT*SHXXKKKKKXXKK*KXKK*KKXKKXKKKXXXXKKKXXK 192
P K KKKKK KK K KK KK KK KKK KKK K
Sbjct: 147 PTKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK 190
Score = 35.9 bits (79), Expect = 0.052
Identities = 19/31 (61%), Positives = 20/31 (64%)
Frame = +1
Query: 91 KKKKKXXKK*KXKK*KKXKKXKKKXXXXKKK 183
KKKKK KK K KK KK KK KKK KK+
Sbjct: 161 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKE 191
Score = 34.3 bits (75), Expect = 0.16
Identities = 18/31 (58%), Positives = 20/31 (64%)
Frame = +1
Query: 91 KKKKKXXKK*KXKK*KKXKKXKKKXXXXKKK 183
KKKKK KK K KK KK KK KKK K++
Sbjct: 162 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKEE 192
>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 36.7 bits (81), Expect = 0.030
Identities = 22/75 (29%), Positives = 23/75 (30%)
Frame = -1
Query: 586 PAPHXPXRXTSPXXRXXPGGPXXPXPXPXRGXXAXRAPXXPGAXXPPERXKXQTAPPPXX 407
P P P +P PGG P P G A P PG PP PPP
Sbjct: 920 PPPPPPPGGNAPLPPPPPGGSAPSQPPPP-GGNAPPPPPPPGGSAPPPGGGAPPLPPPPG 978
Query: 406 RXTXXXRXPXXPXQP 362
P P P
Sbjct: 979 GSAPPPPPPPPPPPP 993
Score = 35.9 bits (79), Expect = 0.052
Identities = 17/47 (36%), Positives = 18/47 (38%)
Frame = -3
Query: 620 PXXRPXXLGXGPXPPPAPXQXKPXXPXXPGGAAXXAXXPXAGAXGAP 480
P P G P PPP P P P PGG A P G+ P
Sbjct: 920 PPPPPPPGGNAPLPPPPPGGSAPSQPPPPGGNAPPPPPPPGGSAPPP 966
Score = 33.9 bits (74), Expect = 0.21
Identities = 17/46 (36%), Positives = 19/46 (41%)
Frame = -3
Query: 596 GXGPXPPPAPXQXKPXXPXXPGGAAXXAXXPXAGAXGAPSTXXXGG 459
G P PPP P P P PGG+A + P G P GG
Sbjct: 917 GSVPPPPPPPGGNAPLPPPPPGGSA-PSQPPPPGGNAPPPPPPPGG 961
Score = 32.7 bits (71), Expect = 0.48
Identities = 22/83 (26%), Positives = 22/83 (26%)
Frame = -2
Query: 600 PGXGAXPPTXPXAXQAPXXAXPRGGRXXRXPXPRGGXGRXEHXXXRGPXXPQSAEXXXXX 421
PG PP P AP P GG P P GG G P
Sbjct: 915 PGGSVPPPPPPPGGNAPLPPPPPGGSAPSQPPPPGGNAPPPPPPPGGSAPPPGGGAPPLP 974
Query: 420 XXPXPXXPXXXGXPXPXNNPXTK 352
P P P P P K
Sbjct: 975 PPPGGSAPPPPPPPPPPPPPMRK 997
Score = 31.5 bits (68), Expect = 1.1
Identities = 23/103 (22%), Positives = 26/103 (25%), Gaps = 4/103 (3%)
Frame = -2
Query: 639 GTDXKAXXXPXXXPGXGAXPPTXPXAXQAPXXAXPRGGRXXRXPXPRGGXGRXEHXXXRG 460
G+ + P PG P P P P GG P P GG + G
Sbjct: 891 GSFPRRNESPSQTPGGSESPSASPPGGSVPPPPPPPGGNAPLPPPPPGGSAPSQPPPPGG 950
Query: 459 ----PXXPQSAEXXXXXXXPXPXXPXXXGXPXPXNNPXTKXXP 343
P P P P G P P P
Sbjct: 951 NAPPPPPPPGGSAPPPGGGAPPLPPPPGGSAPPPPPPPPPPPP 993
>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
Length = 514
Score = 35.1 bits (77), Expect = 0.091
Identities = 26/91 (28%), Positives = 30/91 (32%), Gaps = 5/91 (5%)
Frame = -3
Query: 713 GTXPPPXGXXHQGAXGPXRGXXXPXAXTXRRPXXRPXXLGXG-PXPPPAPXQXKPXXP-- 543
G PPP P RG P P P +G P PPP+ +P P
Sbjct: 284 GIQPPPPPSRGAAPPPPSRGAPPPPPSRGSAPPPPPARMGTAPPPPPPSRSSQRPPPPSR 343
Query: 542 -XXPGGAAXXAXXPXAG-AXGAPSTXXXGGP 456
P + A P G A P GGP
Sbjct: 344 GAPPPPSMGMAPPPVGGAAPPPPPPPPVGGP 374
Score = 30.7 bits (66), Expect = 1.9
Identities = 22/65 (33%), Positives = 22/65 (33%), Gaps = 2/65 (3%)
Frame = -3
Query: 713 GTXPPPXGXXHQGAXGPXR--GXXXPXAXTXRRPXXRPXXLGXGPXPPPAPXQXKPXXPX 540
G PPP G P G P RP P LG P PPP P P
Sbjct: 352 GMAPPPVGGAAPPPPPPPPVGGPPPPPPPIEGRP---PSSLGNPPPPPPPGRGAPPPGPM 408
Query: 539 XPGGA 525
PG A
Sbjct: 409 IPGRA 413
Score = 28.7 bits (61), Expect = 7.9
Identities = 17/58 (29%), Positives = 20/58 (34%)
Frame = -1
Query: 517 PXPXPXRGXXAXRAPXXPGAXXPPERXKXQTAPPPXXRXTXXXRXPXXPXQPXXQXXP 344
P P P RG AP P PP +APPP P P + + P
Sbjct: 287 PPPPPSRGA----APPPPSRGAPPPPPSRGSAPPPPPARMGTAPPPPPPSRSSQRPPP 340
Score = 28.7 bits (61), Expect = 7.9
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = -3
Query: 704 PPPXGXXHQGAXGPXR-GXXXPXAXTXRRPXXRPXXLGXGPXPPPAPXQXKP 552
PPP +GA P G P P P +G GP PPP P + +P
Sbjct: 338 PPPPS---RGAPPPPSMGMAPPPVGGAAPPPPPPPPVG-GPPPPPPPIEGRP 385
>SB_14664| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 61
Score = 33.9 bits (74), Expect = 0.21
Identities = 18/30 (60%), Positives = 19/30 (63%)
Frame = +1
Query: 91 KKKKKXXKK*KXKK*KKXKKXKKKXXXXKK 180
KKKKK KK K KK KK KK KKK K+
Sbjct: 22 KKKKKSKKKIKKKKKKKKKKKKKKEEEGKE 51
Score = 29.9 bits (64), Expect = 3.4
Identities = 17/34 (50%), Positives = 19/34 (55%)
Frame = +1
Query: 91 KKKKKXXKK*KXKK*KKXKKXKKKXXXXKKKXXK 192
+K KK KK + K KK KK KKK KKK K
Sbjct: 7 QKDKKQIKKEEIIKIKKKKKSKKKIKKKKKKKKK 40
>SB_42837| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 131
Score = 33.5 bits (73), Expect = 0.28
Identities = 18/31 (58%), Positives = 18/31 (58%)
Frame = +1
Query: 91 KKKKKXXKK*KXKK*KKXKKXKKKXXXXKKK 183
KKKKK KK K KK KK K KK KKK
Sbjct: 28 KKKKKKKKKKKNKKNKKNKNKNKKKKKMKKK 58
Score = 32.3 bits (70), Expect = 0.64
Identities = 17/34 (50%), Positives = 20/34 (58%)
Frame = +1
Query: 91 KKKKKXXKK*KXKK*KKXKKXKKKXXXXKKKXXK 192
++KK+ KK K KK KK KK KKK KK K
Sbjct: 15 EEKKRKKKKQKKKKKKKKKKKKKKNKKNKKNKNK 48
Score = 31.1 bits (67), Expect = 1.5
Identities = 18/31 (58%), Positives = 19/31 (61%)
Frame = +1
Query: 91 KKKKKXXKK*KXKK*KKXKKXKKKXXXXKKK 183
K+KKK KK K KK KK KK KK KKK
Sbjct: 23 KQKKKKKKK-KKKKKKKNKKNKKNKNKNKKK 52
Score = 29.9 bits (64), Expect = 3.4
Identities = 16/31 (51%), Positives = 17/31 (54%)
Frame = +1
Query: 91 KKKKKXXKK*KXKK*KKXKKXKKKXXXXKKK 183
KKKKK KK K K K K KKK KK+
Sbjct: 30 KKKKKKKKKNKKNKKNKNKNKKKKKMKKKKE 60
Score = 29.1 bits (62), Expect = 5.9
Identities = 16/34 (47%), Positives = 17/34 (50%)
Frame = +1
Query: 91 KKKKKXXKK*KXKK*KKXKKXKKKXXXXKKKXXK 192
+KKKK KK K KK K K K KKK K
Sbjct: 24 QKKKKKKKKKKKKKKNKKNKKNKNKNKKKKKMKK 57
>SB_37029| Best HMM Match : 7tm_1 (HMM E-Value=4.2039e-45)
Length = 1102
Score = 33.1 bits (72), Expect = 0.37
Identities = 17/24 (70%), Positives = 17/24 (70%)
Frame = +1
Query: 91 KKKKKXXKK*KXKK*KKXKKXKKK 162
KKKKK KK K KK KK KK KKK
Sbjct: 372 KKKKKKKKKKKKKKKKKKKKKKKK 395
Score = 33.1 bits (72), Expect = 0.37
Identities = 17/24 (70%), Positives = 17/24 (70%)
Frame = +1
Query: 91 KKKKKXXKK*KXKK*KKXKKXKKK 162
KKKKK KK K KK KK KK KKK
Sbjct: 373 KKKKKKKKKKKKKKKKKKKKKKKK 396
Score = 29.9 bits (64), Expect = 3.4
Identities = 16/31 (51%), Positives = 18/31 (58%)
Frame = +1
Query: 91 KKKKKXXKK*KXKK*KKXKKXKKKXXXXKKK 183
+K + KK K KK KK KK KKK KKK
Sbjct: 366 RKPVRSKKKKKKKKKKKKKKKKKKKKKKKKK 396
>SB_32355| Best HMM Match : Laminin_EGF (HMM E-Value=0)
Length = 1358
Score = 33.1 bits (72), Expect = 0.37
Identities = 17/24 (70%), Positives = 17/24 (70%)
Frame = +1
Query: 91 KKKKKXXKK*KXKK*KKXKKXKKK 162
KKKKK KK K KK KK KK KKK
Sbjct: 67 KKKKKKKKKKKKKKKKKKKKKKKK 90
Score = 33.1 bits (72), Expect = 0.37
Identities = 17/24 (70%), Positives = 17/24 (70%)
Frame = +1
Query: 91 KKKKKXXKK*KXKK*KKXKKXKKK 162
KKKKK KK K KK KK KK KKK
Sbjct: 68 KKKKKKKKKKKKKKKKKKKKKKKK 91
Score = 29.9 bits (64), Expect = 3.4
Identities = 16/31 (51%), Positives = 18/31 (58%)
Frame = +1
Query: 91 KKKKKXXKK*KXKK*KKXKKXKKKXXXXKKK 183
+K + KK K KK KK KK KKK KKK
Sbjct: 61 RKPVRSKKKKKKKKKKKKKKKKKKKKKKKKK 91
>SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 964
Score = 33.1 bits (72), Expect = 0.37
Identities = 20/59 (33%), Positives = 22/59 (37%)
Frame = +1
Query: 448 GXXGPPXXXVLGAPXAPAXGXXAXXAAPPGXXGXXGLXCXGAGGGXGPXPRXXGRXXGR 624
G PP G P P G PPG G GAG G GP P G+ G+
Sbjct: 501 GGPPPPGAGQGGGPPPPGAGQ-GWGQPPPGAGQGGGPPPPGAGQGGGPPPPGAGQGWGQ 558
Score = 33.1 bits (72), Expect = 0.37
Identities = 26/86 (30%), Positives = 27/86 (31%)
Frame = +1
Query: 448 GXXGPPXXXVLGAPXAPAXGXXAXXAAPPGXXGXXGLXCXGAGGGXGPXPRXXGRXXGRL 627
G PP G P P G PPG G GAG G GP P G+
Sbjct: 534 GGPPPPGAGQGGGPPPPGAGQ-GWGQPPPGAGQGGGPPPPGAGQG-GPPPPGAGQEGPPP 591
Query: 628 XVXAXGXXXPLLGPXAPWWXXPXGGG 705
G P G W P G G
Sbjct: 592 PGAGQGGGPPPPGAGQGWGLPPPGSG 617
Score = 32.3 bits (70), Expect = 0.64
Identities = 19/54 (35%), Positives = 20/54 (37%)
Frame = +1
Query: 460 PPXXXVLGAPXAPAXGXXAXXAAPPGXXGXXGLXCXGAGGGXGPXPRXXGRXXG 621
PP G P P G PPG G GAG G GP P G+ G
Sbjct: 494 PPGAGQGGGPPPPGAGQGGGPP-PPGAGQGWGQPPPGAGQGGGPPPPGAGQGGG 546
Score = 31.1 bits (67), Expect = 1.5
Identities = 25/88 (28%), Positives = 28/88 (31%), Gaps = 4/88 (4%)
Frame = -3
Query: 713 GTXPPPXGXXHQGAXGPX---RGXXXPXAXTXRRPXXRPXXLGXGPXPPPAPXQXKPXXP 543
G PP G G P +G P + P G G PPP P + P
Sbjct: 489 GWGQPPPGAGQGGGPPPPGAGQGGGPPPPGAGQGWGQPPPGAGQGGGPPP-PGAGQGGGP 547
Query: 542 XXPG-GAAXXAXXPXAGAXGAPSTXXXG 462
PG G P AG G P G
Sbjct: 548 PPPGAGQGWGQPPPGAGQGGGPPPPGAG 575
Score = 30.7 bits (66), Expect = 1.9
Identities = 18/51 (35%), Positives = 19/51 (37%)
Frame = +1
Query: 460 PPXXXVLGAPXAPAXGXXAXXAAPPGXXGXXGLXCXGAGGGXGPXPRXXGR 612
PP G P P G PPG G GAG G GP P G+
Sbjct: 527 PPGAGQGGGPPPPGAGQGGGPP-PPGAGQGWGQPPPGAGQGGGPPPPGAGQ 576
Score = 29.9 bits (64), Expect = 3.4
Identities = 26/104 (25%), Positives = 27/104 (25%), Gaps = 7/104 (6%)
Frame = -1
Query: 703 RPXXGXXTKGXXAPXGGXXXPGHXPKGXXXXXPGAWXXGPAPHXPXRXTSPXXRXXPGGP 524
+P G G P G G P G W P P GGP
Sbjct: 492 QPPPGAGQGGGPPPPGAGQGGGPPPPGAGQ----GWGQPPPGAGQGGGPPPPGAGQGGGP 547
Query: 523 XXPX-------PXPXRGXXAXRAPXXPGAXXPPERXKXQTAPPP 413
P P P G P G PP Q PPP
Sbjct: 548 PPPGAGQGWGQPPPGAGQGGGPPPPGAGQGGPPPPGAGQEGPPP 591
Score = 29.5 bits (63), Expect = 4.5
Identities = 24/87 (27%), Positives = 27/87 (31%), Gaps = 3/87 (3%)
Frame = -3
Query: 713 GTXPPPXGXXHQGAXGPX---RGXXXPXAXTXRRPXXRPXXLGXGPXPPPAPXQXKPXXP 543
G PP G G P +G P + P G G PPP P + P
Sbjct: 522 GWGQPPPGAGQGGGPPPPGAGQGGGPPPPGAGQGWGQPPPGAGQGGGPPP-PGAGQ-GGP 579
Query: 542 XXPGGAAXXAXXPXAGAXGAPSTXXXG 462
PG P AG G P G
Sbjct: 580 PPPGAGQEGPPPPGAGQGGGPPPPGAG 606
>SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 32.3 bits (70), Expect = 0.64
Identities = 17/62 (27%), Positives = 20/62 (32%)
Frame = -3
Query: 713 GTXPPPXGXXHQGAXGPXRGXXXPXAXTXRRPXXRPXXLGXGPXPPPAPXQXKPXXPXXP 534
G PPP + + P P +P P GP PPP P P P
Sbjct: 343 GVNPPPPPTNNPPSPPPPTNNTPPPPPPTNKPPPPPPPTN-GPPPPPPPTNGPPPPPPPT 401
Query: 533 GG 528
G
Sbjct: 402 NG 403
>SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)
Length = 768
Score = 31.1 bits (67), Expect = 1.5
Identities = 18/51 (35%), Positives = 18/51 (35%), Gaps = 5/51 (9%)
Frame = -3
Query: 596 GXGPXPPPAPX-----QXKPXXPXXPGGAAXXAXXPXAGAXGAPSTXXXGG 459
G P PPP P P P PGGAA P G P GG
Sbjct: 659 GPPPPPPPPPGGQAGGAPPPPPPPLPGGAAPPPPPPIGGGAPPPPPPGFGG 709
>SB_58050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 307
Score = 31.1 bits (67), Expect = 1.5
Identities = 29/93 (31%), Positives = 30/93 (32%), Gaps = 3/93 (3%)
Frame = +1
Query: 448 GXXGPPXXXVLGAPXAPAXGXXAXXAAPPGXXGXXGL-XCXGAGGGXGP--XPRXXGRXX 618
G GPP GAP P A PPG G G GA G GP P G
Sbjct: 79 GLNGPPGPP--GAPGPPGEPGQVGMAGPPGPPGHVGEDGAPGAPGAPGPPGSPGAPGLPG 136
Query: 619 GRLXVXAXGXXXPLLGPXAPWWXXPXGGGXVPG 717
+ G P AP P G PG
Sbjct: 137 EKGDPGLQGAPGAAGLPGAPGLPGPQGPMGPPG 169
>SB_36647| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 124
Score = 30.7 bits (66), Expect = 1.9
Identities = 15/24 (62%), Positives = 17/24 (70%)
Frame = +1
Query: 91 KKKKKXXKK*KXKK*KKXKKXKKK 162
+KKKK KK K +K KK KK KKK
Sbjct: 5 RKKKKQKKKKKKRKKKKQKKQKKK 28
>SB_30371| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 955
Score = 30.3 bits (65), Expect = 2.6
Identities = 21/76 (27%), Positives = 26/76 (34%), Gaps = 1/76 (1%)
Frame = -1
Query: 586 PAPHXPXRXTSPXXRXXPGGPXXP-XPXPXRGXXAXRAPXXPGAXXPPERXKXQTAPPPX 410
P P P R +S P GP P P P RAP P P+ + PP
Sbjct: 512 PPPIPPIRCSSVSRPVRPTGPPPPPVPKPQFDDTPTRAPPPPDMQTNPDTERRPPPLPPA 571
Query: 409 XRXTXXXRXPXXPXQP 362
+ + P P P
Sbjct: 572 PKRALDLK-PNLPPVP 586
>SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 29.9 bits (64), Expect = 3.4
Identities = 15/36 (41%), Positives = 16/36 (44%)
Frame = -3
Query: 587 PXPPPAPXQXKPXXPXXPGGAAXXAXXPXAGAXGAP 480
P PPP+P P P P AA A P A AP
Sbjct: 51 PPPPPSPPAAAPAAPPPP-AAAPAAPPPPAAPPAAP 85
>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
Length = 480
Score = 29.5 bits (63), Expect = 4.5
Identities = 22/66 (33%), Positives = 25/66 (37%), Gaps = 2/66 (3%)
Frame = -1
Query: 604 GAWXXGPAPHXPX-RXTSPXXRXX-PGGPXXPXPXPXRGXXAXRAPXXPGAXXPPERXKX 431
GA GPA P R T+P + P P P P RG + P PP K
Sbjct: 115 GAGPRGPALKPPGFRTTAPPPKNSSPPPPFGAPPPPDRGGQLAKKPSQGSFPPPPPMGK- 173
Query: 430 QTAPPP 413
PPP
Sbjct: 174 --PPPP 177
Score = 29.5 bits (63), Expect = 4.5
Identities = 17/56 (30%), Positives = 20/56 (35%)
Frame = -1
Query: 571 PXRXTSPXXRXXPGGPXXPXPXPXRGXXAXRAPXXPGAXXPPERXKXQTAPPPXXR 404
P +S P G P P P RG + P P PP + PPP R
Sbjct: 232 PPTGSSRPLPAPPPGENRPPP-PMRGPTSGGEPPPPKNAPPPPKRGSSNPPPPPTR 286
Score = 28.7 bits (61), Expect = 7.9
Identities = 22/74 (29%), Positives = 26/74 (35%), Gaps = 2/74 (2%)
Frame = -1
Query: 586 PAPHXPXRXTSPXXRXXPGGPXXPXPXPXRGXXAXR-APXXPGAXXP-PERXKXQTAPPP 413
P PH ++P GP P P P RG AP G+ P P + PPP
Sbjct: 196 PPPHS-RHGSAPPPPERSSGP--PPPPPGRGPSQRSLAPPPTGSSRPLPAPPPGENRPPP 252
Query: 412 XXRXTXXXRXPXXP 371
R P P
Sbjct: 253 PMRGPTSGGEPPPP 266
>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
Length = 392
Score = 29.5 bits (63), Expect = 4.5
Identities = 22/66 (33%), Positives = 25/66 (37%), Gaps = 2/66 (3%)
Frame = -1
Query: 604 GAWXXGPAPHXPX-RXTSPXXRXX-PGGPXXPXPXPXRGXXAXRAPXXPGAXXPPERXKX 431
GA GPA P R T+P + P P P P RG + P PP K
Sbjct: 27 GAGPRGPALKPPGFRTTAPPPKNSSPPPPFGAPPPPDRGGQLAKKPSQGSFPPPPPMGK- 85
Query: 430 QTAPPP 413
PPP
Sbjct: 86 --PPPP 89
Score = 29.5 bits (63), Expect = 4.5
Identities = 17/56 (30%), Positives = 20/56 (35%)
Frame = -1
Query: 571 PXRXTSPXXRXXPGGPXXPXPXPXRGXXAXRAPXXPGAXXPPERXKXQTAPPPXXR 404
P +S P G P P P RG + P P PP + PPP R
Sbjct: 144 PPTGSSRPLPAPPPGENRPPP-PMRGPTSGGEPPPPKNAPPPPKRGSSNPPPPPTR 198
Score = 28.7 bits (61), Expect = 7.9
Identities = 22/74 (29%), Positives = 26/74 (35%), Gaps = 2/74 (2%)
Frame = -1
Query: 586 PAPHXPXRXTSPXXRXXPGGPXXPXPXPXRGXXAXR-APXXPGAXXP-PERXKXQTAPPP 413
P PH ++P GP P P P RG AP G+ P P + PPP
Sbjct: 108 PPPHS-RHGSAPPPPERSSGP--PPPPPGRGPSQRSLAPPPTGSSRPLPAPPPGENRPPP 164
Query: 412 XXRXTXXXRXPXXP 371
R P P
Sbjct: 165 PMRGPTSGGEPPPP 178
>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
Length = 457
Score = 29.5 bits (63), Expect = 4.5
Identities = 16/58 (27%), Positives = 16/58 (27%)
Frame = -1
Query: 586 PAPHXPXRXTSPXXRXXPGGPXXPXPXPXRGXXAXRAPXXPGAXXPPERXKXQTAPPP 413
P P P P P P P P P P P PP PPP
Sbjct: 370 PPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPP 427
Score = 29.5 bits (63), Expect = 4.5
Identities = 16/57 (28%), Positives = 17/57 (29%)
Frame = -1
Query: 586 PAPHXPXRXTSPXXRXXPGGPXXPXPXPXRGXXAXRAPXXPGAXXPPERXKXQTAPP 416
P P P P P P P P P P P PP + APP
Sbjct: 385 PPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPPPPPPPALRLACAPP 441
Score = 28.7 bits (61), Expect = 7.9
Identities = 17/63 (26%), Positives = 17/63 (26%)
Frame = -1
Query: 586 PAPHXPXRXTSPXXRXXPGGPXXPXPXPXRGXXAXRAPXXPGAXXPPERXKXQTAPPPXX 407
P P P P P P P P P P P PP PP
Sbjct: 384 PPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPPPPPPPALRLACAPPRL 443
Query: 406 RXT 398
R T
Sbjct: 444 RFT 446
>SB_50768| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1069
Score = 29.1 bits (62), Expect = 5.9
Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 3/70 (4%)
Frame = -1
Query: 571 PXRXTSPXXRXXPGGPXXPXPXPXRGXXAXRAPXXPG---AXXPPERXKXQTAPPPXXRX 401
P + T+P PG P P P P G A P ++ Q+ PP +
Sbjct: 482 PTKKTTPQSMIPPGKPTAPTPKPPGSPVGVTQGPTEGVVSAKPPTKKTTPQSMIPPGTKT 541
Query: 400 TXXXRXPXXP 371
+ + P P
Sbjct: 542 SPTPKPPGSP 551
>SB_47673| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1480
Score = 29.1 bits (62), Expect = 5.9
Identities = 15/22 (68%), Positives = 15/22 (68%)
Frame = +1
Query: 97 KKKXXKK*KXKK*KKXKKXKKK 162
KKK KK K KK KK KK KKK
Sbjct: 344 KKKKKKKKKKKKKKKKKKKKKK 365
>SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1572
Score = 29.1 bits (62), Expect = 5.9
Identities = 16/56 (28%), Positives = 16/56 (28%)
Frame = -1
Query: 580 PHXPXRXTSPXXRXXPGGPXXPXPXPXRGXXAXRAPXXPGAXXPPERXKXQTAPPP 413
P P S PG P P P R P P PP PPP
Sbjct: 389 PRVPSPGASHPRVPPPGAPHPRVPPPGASHQRVRPPGAPHPRVPPPGAPHPRFPPP 444
Score = 28.7 bits (61), Expect = 7.9
Identities = 16/58 (27%), Positives = 16/58 (27%)
Frame = -1
Query: 586 PAPHXPXRXTSPXXRXXPGGPXXPXPXPXRGXXAXRAPXXPGAXXPPERXKXQTAPPP 413
P P P PG P P P P P PP Q PPP
Sbjct: 447 PHPRVPPPGAPHPRVPPPGAPHPRVPPPGAPHPRVPPPGAPHPRVPPPGAPHQRVPPP 504
>SB_59302| Best HMM Match : Collagen (HMM E-Value=0)
Length = 993
Score = 28.7 bits (61), Expect = 7.9
Identities = 24/86 (27%), Positives = 26/86 (30%), Gaps = 7/86 (8%)
Frame = -3
Query: 716 PG-TXPP--PXGXXHQGAXGPXRGXXXPXAXTXRR----PXXRPXXLGXGPXPPPAPXQX 558
PG PP P G +QG G G P P P +G P P Q
Sbjct: 233 PGDVGPPGNPGGPGYQGNHGNPAGPQGPNGLPGPNGILGPPGPPGDMGPPGLPGPPGPQM 292
Query: 557 KPXXPXXPGGAAXXAXXPXAGAXGAP 480
P P PG G G P
Sbjct: 293 PPGPPGLPGAPGPKGPPGTNGPLGPP 318
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,066,741
Number of Sequences: 59808
Number of extensions: 136387
Number of successful extensions: 956
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 3003134652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -