Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_P10
         (889 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch...   116   6e-27
SPAC926.03 |rlc1||myosin II regulatory light chain |Schizosaccha...   110   2e-25
SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb...    86   6e-18
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces...    85   2e-17
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma...    60   5e-10
SPAC1687.14c |||EF hand family protein, unknown role|Schizosacch...    38   0.001
SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi...    35   0.018
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    30   0.38 
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    29   0.67 
SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce...    29   0.67 
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual    29   0.88 
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    29   1.2  
SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|c...    28   2.0  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    26   6.2  

>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 150

 Score =  116 bits (278), Expect = 6e-27
 Identities = 56/138 (40%), Positives = 94/138 (68%), Gaps = 5/138 (3%)
 Frame = +2

Query: 242 QIAEFKEAFNMIDQNRDGFIDKDDLHDMLASLGKNPTEDYLEGMMNEAP----GPINFTM 409
           QIAEF+EAF++ D+++DG I  ++L  ++ SLG++PT   L+ M+NE      G I+FT 
Sbjct: 10  QIAEFREAFSLFDRDQDGNITSNELGVVMRSLGQSPTAAELQDMINEVDADGNGTIDFTE 69

Query: 410 FLTLFGERLQGTDPEDVIKNAFGCFDEENNGVIGEERLRELLTTMGDRFTDDDVDEMLRE 589
           FLT+   +++ TD E+ ++ AF  FD++ NG I  E L  +LT++G+R + ++V +M+RE
Sbjct: 70  FLTMMARKMKDTDNEEEVREAFKVFDKDGNGYITVEELTHVLTSLGERLSQEEVADMIRE 129

Query: 590 API-RDGLFDYVEFTRIL 640
           A    DG+ +Y EF+R++
Sbjct: 130 ADTDGDGVINYEEFSRVI 147



 Score = 36.7 bits (81), Expect = 0.004
 Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
 Frame = +2

Query: 227 MFDQAQIAEFKEAFNMIDQNRDGFIDKDDLHDMLASLGKNPTEDYLEGMMNEA----PGP 394
           M D     E +EAF + D++ +G+I  ++L  +L SLG+  +++ +  M+ EA     G 
Sbjct: 78  MKDTDNEEEVREAFKVFDKDGNGYITVEELTHVLTSLGERLSQEEVADMIREADTDGDGV 137

Query: 395 INFTMF 412
           IN+  F
Sbjct: 138 INYEEF 143


>SPAC926.03 |rlc1||myosin II regulatory light chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 184

 Score =  110 bits (265), Expect = 2e-25
 Identities = 60/170 (35%), Positives = 95/170 (55%)
 Frame = +2

Query: 155 SSRKTAGRRINKKRAQRATSNVFAMFDQAQIAEFKEAFNMIDQNRDGFIDKDDLHDMLAS 334
           SS  T+ +R+  + A+RA+S  FA    +QI E KEAF ++D++ DG I ++D+  ML S
Sbjct: 17  SSNTTSSQRVAAQAAKRASSGAFAQLTSSQIQELKEAFALLDKDGDGNIGREDVKTMLTS 76

Query: 335 LGKNPTEDYLEGMMNEAPGPINFTMFLTLFGERLQGTDPEDVIKNAFGCFDEENNGVIGE 514
           L ++ +ED +  M      PIN   FLT  G  L    P + +  AF  FD+  +G I  
Sbjct: 77  LNQDASEDSINHMFESINPPINLAAFLTAMGSMLCRISPRNDLLEAFSTFDDTQSGKIPI 136

Query: 515 ERLRELLTTMGDRFTDDDVDEMLREAPIRDGLFDYVEFTRILKHGAKDKD 664
             +R+ L++MGDR    +V+ +LR +    G+F Y +F   +  G+KD +
Sbjct: 137 STMRDALSSMGDRMDPQEVESILR-SYTSHGVFYYEKFVDAIA-GSKDSN 184


>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 141

 Score = 86.2 bits (204), Expect = 6e-18
 Identities = 41/133 (30%), Positives = 83/133 (62%), Gaps = 4/133 (3%)
 Frame = +2

Query: 254 FKEAFNMIDQNRDGFIDKDDLHDMLASLGKNPTEDYLEGMMNEAPGPINFTMFLTLF--- 424
           +K+AF++ D++  G I K  + D+L + G+NPT   +  + +  P  ++   FL +    
Sbjct: 8   YKQAFSLFDRHGTGRIPKTSIGDLLRACGQNPTLAEITEIESTLPAEVDMEQFLQVLNRP 67

Query: 425 -GERLQGTDPEDVIKNAFGCFDEENNGVIGEERLRELLTTMGDRFTDDDVDEMLREAPIR 601
            G  + G DPE+ +K  F  FD++  G+IG   LR +LT++G++ +++++DE+L+  P++
Sbjct: 68  NGFDMPG-DPEEFVKG-FQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGVPVK 125

Query: 602 DGLFDYVEFTRIL 640
           DG+ +Y +F +++
Sbjct: 126 DGMVNYHDFVQMI 138


>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score = 84.6 bits (200), Expect = 2e-17
 Identities = 44/132 (33%), Positives = 74/132 (56%), Gaps = 1/132 (0%)
 Frame = +2

Query: 242 QIAEFKEAFNMIDQNRDGFIDKDDLHDMLASLGKNPTEDYLEGMMNEAPGPINFTMFLTL 421
           Q  E KEAF + D ++DG I    +  +L SLG N T+  L  + NE    I+   F++ 
Sbjct: 7   QTDEMKEAFVLYDIDKDGLIPTSHVGSVLRSLGINVTDAELAKLSNELGDAIDEKKFMSF 66

Query: 422 FGERLQGTDPEDVIKNAFGCFDEENNGVIGEERLRELLTTMGDRFTDDDVDEMLREA-PI 598
              +L+ T+ E+    AF  FD++N+G I   +  + + T+G++ +D++V  M++EA P 
Sbjct: 67  VSNKLRETESEEEYIKAFRVFDKDNSGYIETAKFADYMKTLGEKLSDNEVQLMVQEADPT 126

Query: 599 RDGLFDYVEFTR 634
             G FDY +F +
Sbjct: 127 NSGSFDYYDFVQ 138


>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 176

 Score = 59.7 bits (138), Expect = 5e-10
 Identities = 35/140 (25%), Positives = 67/140 (47%), Gaps = 5/140 (3%)
 Frame = +2

Query: 236 QAQIAEFKEAFNMIDQNRDGFIDKDDLHDMLASLGKNPTEDYLEGMMNE----APGPINF 403
           + Q  +  EAF + D ++D  ID  +L   + +LG N  +  +  ++ +      G +  
Sbjct: 33  EEQRQDINEAFKLFDSDKDNAIDYHELRAAMRALGFNAEKSEVLKILRDFDKTGKGYLQM 92

Query: 404 TMFLTLFGERLQGTDPEDVIKNAFGCFDEENNGVIGEERLRELLTTMGDRFTDDDVDEML 583
             F+ +  E++   DP + IK AF  FD++  G I    LR +   + +   D +++ M+
Sbjct: 93  EDFVRVMTEKIVERDPLEEIKRAFELFDDDETGKISLRNLRRVAKELNENIDDQELEAMI 152

Query: 584 REAPI-RDGLFDYVEFTRIL 640
            E  + +DG  +  EF  I+
Sbjct: 153 EEFDLDQDGEINEQEFIAIM 172


>SPAC1687.14c |||EF hand family protein, unknown
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 76

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 18/45 (40%), Positives = 29/45 (64%)
 Frame = +2

Query: 251 EFKEAFNMIDQNRDGFIDKDDLHDMLASLGKNPTEDYLEGMMNEA 385
           E +EAF++ D    G+ID +DL    A LG+N T++ L+ M++ A
Sbjct: 13  EAEEAFDLFDVTHKGYIDFEDLRRSCAQLGENLTKEQLQLMLDLA 57


>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
           Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score = 34.7 bits (76), Expect = 0.018
 Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 4/118 (3%)
 Frame = +2

Query: 299 IDKDDLHDMLAS--LGKNPTEDYLEGMMNEAP-GPINFTMFLTLFGERLQGTDPEDVIKN 469
           + +D L D++ S    K   + + +G   + P G +N + F  ++ +     DP    + 
Sbjct: 8   LSQDQLQDLVRSTRFDKKELQQWYKGFFKDCPSGHLNKSEFQKIYKQFFPFGDPSAFAEY 67

Query: 470 AFGCFDEENNGVIG-EERLRELLTTMGDRFTDDDVDEMLREAPIRDGLFDYVEFTRIL 640
            F  FD + NG I  +E +  L  T      D  +          +GL  Y E  RI+
Sbjct: 68  VFNVFDADKNGYIDFKEFICALSVTSRGELNDKLIWAFQLYDLDNNGLISYDEMLRIV 125



 Score = 29.1 bits (62), Expect = 0.88
 Identities = 16/61 (26%), Positives = 28/61 (45%)
 Frame = +2

Query: 182 INKKRAQRATSNVFAMFDQAQIAEFKEAFNMIDQNRDGFIDKDDLHDMLASLGKNPTEDY 361
           +NK   Q+     F   D +  AE+   FN+ D +++G+ID  +    L+   +    D 
Sbjct: 43  LNKSEFQKIYKQFFPFGDPSAFAEY--VFNVFDADKNGYIDFKEFICALSVTSRGELNDK 100

Query: 362 L 364
           L
Sbjct: 101 L 101


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
 Frame = -2

Query: 504 TPLFSSSKHPNAFLMTSSGSVPCSLSPNRVRNIVKLIGPGASFIIPSK*SSV-GFLPKDA 328
           TP  S    P   +++SS S+P S S +   +I  +    +S  IPS  SSV   L    
Sbjct: 525 TPSSSIISSPMTSVLSSSSSIPTSSSSDFSSSITTISSGISSSSIPSTFSSVSSILSSST 584

Query: 327 SISCRSSLSMNPS 289
           S    +SLS++ S
Sbjct: 585 SSPSSTSLSISSS 597


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
            Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = -1

Query: 286  VLINHIESLLELCYLSLIKHSKHIGGCTL--CALLVNATTGCL 164
            +LIN ++S + LC+L    H + +   T+  C  +V  ++ C+
Sbjct: 1119 ILINFLDSFIRLCHLPAKTHDERVTAVTVIRCTQIVALSSSCV 1161


>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 174

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
 Frame = +2

Query: 251 EFKEAFNMIDQNRDGFIDKDDLHDMLASL-GKNPTEDYLEGMMNE 382
           + K AF + D +RDG+I   +L+ +L  + G N  ED L+ ++++
Sbjct: 94  KLKFAFKIYDIDRDGYISNGELYLVLKMMVGTNLREDQLQQIVDK 138


>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -1

Query: 592 CFPEHFIHIIVCEAIAHCGKQL-AESLLTDYTIVLFIETPKCIF 464
           CF   F H I C A+    K + +   +T YT++ +  +P  I+
Sbjct: 137 CFASIFFHAIACYALYLLTKSIFSNQKMTAYTVIFYCFSPSGIY 180



 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = -1

Query: 802 LHTFQLLLMRIKSNFSGTFLGCFIVHIYLLHQLKSA 695
           LH+F+ +   +  +    ++GCF +H  +L+++ SA
Sbjct: 342 LHSFRSIKSHLVLSALYLYIGCFHMHTQVLNRMSSA 377


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
 Frame = +2

Query: 389 GP-INFTMFLTLFGERLQG----TDPEDVIKNAFGCFDEENNGVIGEERLREL 532
           GP + F + L LF    QG    TD   V+K    CFD  N G   +E++  L
Sbjct: 404 GPRVLFQVALALFKVNAQGILNATDDSSVMKVFRQCFDHINQGTAADEKMAAL 456


>SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 371

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +2

Query: 233 DQAQIAEFKEAFNMIDQNRDGFIDKDDLHDML--ASLGKNPTEDYLEGMMNEAPGP 394
           +  ++ EF+E  N  + +    +DK D HD +  A + K P   ++   +  A  P
Sbjct: 267 ESPRVEEFEELLNQFEGDEKVSVDKIDAHDKMTEAQVVKIPPVQFMNARVAAAENP 322


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = +2

Query: 443 TDPEDVIKNAFGCFDEENNGVIGEERLRELLTTMGDRFTDDDVDEM 580
           TD  D++KN F  F+  +N +     L +L   +     DD  + +
Sbjct: 826 TDESDIVKNTFVSFNTTSNSLGNTTALSQLKGHINSVIVDDSYNNI 871


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,415,842
Number of Sequences: 5004
Number of extensions: 70282
Number of successful extensions: 190
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)