Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_P08
(871 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6553| Best HMM Match : Complex1_17_2kD (HMM E-Value=2.50006e-41) 127 1e-29
SB_4869| Best HMM Match : Coprinus_mating (HMM E-Value=2.8) 31 1.6
SB_52861| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_11942| Best HMM Match : Ank (HMM E-Value=3.6e-22) 30 2.1
SB_37337| Best HMM Match : PGI (HMM E-Value=0) 29 3.7
SB_36384| Best HMM Match : Keratin_B2 (HMM E-Value=2.3) 29 3.7
SB_27756| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_59125| Best HMM Match : DUF1309 (HMM E-Value=4.2) 29 6.5
SB_32268| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.5
>SB_6553| Best HMM Match : Complex1_17_2kD (HMM E-Value=2.50006e-41)
Length = 134
Score = 127 bits (307), Expect = 1e-29
Identities = 55/112 (49%), Positives = 74/112 (66%)
Frame = +2
Query: 173 YKLYRQDDVKDGVLVGEDKYGNKYYENPRFFYSRNRWVEYSDKYYLNYDGSQVPAEWFGW 352
++ R++ + GV VGEDKYGNKYYEN ++ + RNR+VEY + Y +QVP EW W
Sbjct: 22 WRFMRENTARIGVFVGEDKYGNKYYENNKYLFGRNRFVEYPYAGRMEYHATQVPPEWHRW 81
Query: 353 LHYKTDLPPHQDPSRPHYKWMADHTENLSGTTAQYVPYSTTRPKVEAWEPKR 508
LH TD PP + P P K+ DH + +GT +YVPYSTTRPK+E+W P +
Sbjct: 82 LHNMTDDPPSKVPPVPR-KFFLDHETSKTGTDEKYVPYSTTRPKIESWTPPK 132
>SB_4869| Best HMM Match : Coprinus_mating (HMM E-Value=2.8)
Length = 796
Score = 30.7 bits (66), Expect = 1.6
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = -3
Query: 464 TAHIGRSCQKDFRCGP--PST-CSGDDSDPDAEANRFCSVANQTIQREPDFHHSSSNT 300
T H G S + C P P C+GDD+D D + +R V + ++ F+ S T
Sbjct: 122 TKHGGNSKNSEESCKPFDPHRHCNGDDNDSDDDDHRLHHVGEYSCSKKTSFNSSKFKT 179
>SB_52861| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1487
Score = 30.3 bits (65), Expect = 2.1
Identities = 28/104 (26%), Positives = 42/104 (40%), Gaps = 9/104 (8%)
Frame = -3
Query: 509 CVSAPRLPLWVGSYCTAHIGRSCQKDFRCGPPS--TCSGDDSDPDAEANRFCS----VAN 348
CV P + C + C +C P TCS + P+ C+ AN
Sbjct: 218 CVCKPGYEQALSGQCVPVCTQGCVNG-KCTSPDVCTCSFGWTGPNCSVECLCNGHGHCAN 276
Query: 347 QTIQRE--PDF-HHSSSNTCPSTRPICSCCKRNVGSHSICYHIC 225
T +R+ D +H++ ++C P+ RN GS CYH C
Sbjct: 277 AT-KRDVCTDCRNHTTGSSCQYCEPLYVGDARNNGSCVSCYHTC 319
>SB_11942| Best HMM Match : Ank (HMM E-Value=3.6e-22)
Length = 540
Score = 30.3 bits (65), Expect = 2.1
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 7/66 (10%)
Frame = +2
Query: 212 LVGEDKYGNKYYENPRF------FYSRNRWVEYSDKYYLNYDGSQVPAEWFGWLHYKTDL 373
LVG D GNKYYE R R + + + Y P EW W+ K +
Sbjct: 17 LVGTDLDGNKYYEIVRSGSHAGDMSQRTKREVVTKLKHDQYTPGTNPIEWESWIRGKREE 76
Query: 374 PP-HQD 388
PP H++
Sbjct: 77 PPTHEE 82
>SB_37337| Best HMM Match : PGI (HMM E-Value=0)
Length = 391
Score = 29.5 bits (63), Expect = 3.7
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 407 KWMADHTENLSGTTAQYVPYSTTRPKV 487
KW+ DH ++ S +V ST PKV
Sbjct: 171 KWLLDHLKDKSAVAKHFVALSTNEPKV 197
>SB_36384| Best HMM Match : Keratin_B2 (HMM E-Value=2.3)
Length = 199
Score = 29.5 bits (63), Expect = 3.7
Identities = 15/46 (32%), Positives = 28/46 (60%)
Frame = -3
Query: 548 DKF*REFIFKHCLCVSAPRLPLWVGSYCTAHIGRSCQKDFRCGPPS 411
DK+ R+ IF+ + +P +P WVG+ C + + + ++ +RC PS
Sbjct: 129 DKWGRK-IFRDTVLSWSPMIPCWVGTPCKS-VVQHIRRKYRCLGPS 172
>SB_27756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 520
Score = 29.1 bits (62), Expect = 4.9
Identities = 12/51 (23%), Positives = 23/51 (45%)
Frame = +2
Query: 359 YKTDLPPHQDPSRPHYKWMADHTENLSGTTAQYVPYSTTRPKVEAWEPKRK 511
YK+ PPH+ PH + H + P+ + +P ++++P K
Sbjct: 423 YKSYQPPHKSYQPPHKSYQPPHKSYQPPHKSYQPPHKSYQPPHKSYQPPHK 473
Score = 29.1 bits (62), Expect = 4.9
Identities = 12/51 (23%), Positives = 23/51 (45%)
Frame = +2
Query: 359 YKTDLPPHQDPSRPHYKWMADHTENLSGTTAQYVPYSTTRPKVEAWEPKRK 511
+K+ PPH+ PH + H + PY + +P ++++P K
Sbjct: 444 HKSYQPPHKSYQPPHKSYQPPHKSYQPPHKSYQPPYKSYQPPYKSYQPPYK 494
Score = 28.3 bits (60), Expect = 8.6
Identities = 11/48 (22%), Positives = 22/48 (45%)
Frame = +2
Query: 359 YKTDLPPHQDPSRPHYKWMADHTENLSGTTAQYVPYSTTRPKVEAWEP 502
+K+ PPH+ PH + H + PY + +P ++++P
Sbjct: 451 HKSYQPPHKSYQPPHKSYQPPHKSYQPPYKSYQPPYKSYQPPYKSYQP 498
>SB_59125| Best HMM Match : DUF1309 (HMM E-Value=4.2)
Length = 187
Score = 28.7 bits (61), Expect = 6.5
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -3
Query: 530 FIFKHCLCVSAPRLPL 483
F+ KH LC+SAP LPL
Sbjct: 96 FLNKHYLCISAPALPL 111
>SB_32268| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 28.7 bits (61), Expect = 6.5
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 221 EDKYGNKYYENPRFFYSRNRWVEYSDKYY 307
++KYG++ YE+ + Y + EY DK Y
Sbjct: 6 DEKYGDEEYEDKEYEYEKYGDEEYEDKKY 34
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,360,306
Number of Sequences: 59808
Number of extensions: 557270
Number of successful extensions: 1443
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1439
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2491217872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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