Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_P08
         (871 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024876-8|AAF60889.1|  187|Caenorhabditis elegans Hypothetical ...   128   7e-30
AF100656-7|AAF99964.2|  615|Caenorhabditis elegans Hypothetical ...    31   1.4  
AL032651-1|CAB60580.1|  681|Caenorhabditis elegans Hypothetical ...    30   1.9  
Z81510-5|CAB04165.1|  188|Caenorhabditis elegans Hypothetical pr...    29   4.3  
AL033536-1|CAA22138.1|  908|Caenorhabditis elegans Hypothetical ...    28   10.0 
AC006833-11|AAU87801.1|  175|Caenorhabditis elegans Enhancer of ...    28   10.0 

>AC024876-8|AAF60889.1|  187|Caenorhabditis elegans Hypothetical
           protein Y94H6A.8 protein.
          Length = 187

 Score =  128 bits (308), Expect = 7e-30
 Identities = 57/115 (49%), Positives = 72/115 (62%), Gaps = 1/115 (0%)
 Frame = +2

Query: 170 LYKLYRQDDVKDGVLVGEDKYGNKYYENPRFFYSRNRWVEYSDKYYLNYDGSQVPAEWFG 349
           L K Y  D  + G LVG D +GN+YYEN  +F  RNRWVE+ DK +L+YD +QVP EW  
Sbjct: 70  LKKRYLMDATRVGTLVGSDNFGNRYYENNAYFVPRNRWVEFPDKVWLDYDATQVPPEWHS 129

Query: 350 WLHYKTDLPPHQDPSRPHYKWMADHTENLS-GTTAQYVPYSTTRPKVEAWEPKRK 511
           WLH+ TD  P   P  P   W+ +H EN S     +YVPYSTTR K++ W+P  K
Sbjct: 130 WLHHITDDAPSVKPP-PTQDWVLEHKENTSIYADKKYVPYSTTRTKIQGWQPGEK 183



 Score = 28.3 bits (60), Expect = 7.5
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +1

Query: 82  KMSLGKFLALDKLSNFFNVIRQNGGIRA 165
           +MSL  +L +DK+  F  ++++ GG++A
Sbjct: 41  QMSLKAWLGIDKIQKFGQMVKEIGGVKA 68


>AF100656-7|AAF99964.2|  615|Caenorhabditis elegans Hypothetical
           protein F49F1.8 protein.
          Length = 615

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
 Frame = -3

Query: 428 RCGPPSTCSGDDSDPDAEANRFCSVANQTIQREPD---FHHSSSNTCPSTRPICSCCKRN 258
           RC   S C  + SD D+++      A  TI+  P+    H  S N     + +C CCK +
Sbjct: 397 RCHQDSECRVESSDSDSDSLNQDEHAVHTIEENPNTKSSHPKSEN--QRFQDVCQCCK-S 453

Query: 257 VGSHS 243
           VG  S
Sbjct: 454 VGHKS 458


>AL032651-1|CAB60580.1|  681|Caenorhabditis elegans Hypothetical
           protein Y6D1A.1 protein.
          Length = 681

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = -3

Query: 506 VSAPRLPLWVGSYCTAHIGRSCQKDFRCGPPSTCSG-DDSDPDAEANRFCSVANQTIQRE 330
           V+  R  L +   CT  +GR   KD R    + C    D DP+ E + +   A  T  +E
Sbjct: 285 VNNRRKALIMAGRCTRCLGRHSFKDCRSAKFNVCMYCKDEDPNVELHNYGLCAKPTPSQE 344

Query: 329 PD 324
           P+
Sbjct: 345 PE 346


>Z81510-5|CAB04165.1|  188|Caenorhabditis elegans Hypothetical
           protein F21D9.8 protein.
          Length = 188

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 15/50 (30%), Positives = 18/50 (36%)
 Frame = -3

Query: 380 AEANRFCSVANQTIQREPDFHHSSSNTCPSTRPICSCCKRNVGSHSICYH 231
           AEA   C         + D+HH     CP  +  CS C  N       YH
Sbjct: 117 AEALSMCKHCLTVGVTDDDWHHEG---CPKAKDTCSVCANNTNRVGCKYH 163


>AL033536-1|CAA22138.1|  908|Caenorhabditis elegans Hypothetical
           protein Y53C10A.4 protein.
          Length = 908

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 20/48 (41%), Positives = 24/48 (50%)
 Frame = -3

Query: 425 CGPPSTCSGDDSDPDAEANRFCSVANQTIQREPDFHHSSSNTCPSTRP 282
           CG P   S DDSD    A +  SVA  T   EP    SSS++  S+ P
Sbjct: 673 CGLPHISSNDDSDSRFPAFKSSSVAMLT---EPYKSSSSSSSSTSSIP 717


>AC006833-11|AAU87801.1|  175|Caenorhabditis elegans Enhancer of
           hand mutation hnd-1protein 3, isoform c protein.
          Length = 175

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
 Frame = -3

Query: 323 FHHSSSNTCPSTRPI-C-SCCKRNVGSHSICYHICLLQLEHRPLH 195
           FH  S +    + P  C SC K    SH +  H     L+H PLH
Sbjct: 34  FHVDSEHIIRGSSPAKCKSCIKWFNSSHRLLLHFHTAHLDHTPLH 78


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,362,840
Number of Sequences: 27780
Number of extensions: 425839
Number of successful extensions: 1082
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1081
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)