Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_P08
         (871 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g03100.1 68416.m00306 NADH:ubiquinone oxidoreductase family p...    79   5e-15
At4g26965.1 68417.m03880 NADH:ubiquinone oxidoreductase family p...    36   0.035
At3g51570.1 68416.m05648 disease resistance protein (TIR-NBS-LRR...    29   4.0  
At4g34900.1 68417.m04949 xanthine dehydrogenase, putative simila...    28   9.3  
At4g33530.1 68417.m04765 potassium transporter family protein si...    28   9.3  

>At3g03100.1 68416.m00306 NADH:ubiquinone oxidoreductase family
           protein contains Pfam PF05071: NADH:ubiquinone
           oxidoreductase 17.2 kD subunit; similar to
           ethylene-regulated ER6 protein (GI:5669654)
           [Lycopersicon esculentum]; identical to Probable
           NADH-ubiquinone oxidoreductase subunit B17.2 (EC
           1.6.5.3) (EC 1.6.99.3) (Complex I-B17.2) (CI-B17.2)
           (Swiss-Prot:Q9M9M9) [Arabidopsis thaliana]
          Length = 159

 Score = 78.6 bits (185), Expect = 5e-15
 Identities = 43/99 (43%), Positives = 56/99 (56%), Gaps = 4/99 (4%)
 Frame = +2

Query: 212 LVGEDKYGNKYYEN-PRFFYSRNRWVEYSDKYYLNYDGSQVPAEWFGWLHYKTDLPPHQD 388
           LVG DK+GNKYY+      Y R+RWVEY+ K    Y+ SQVPAEW GWLH+ TD    + 
Sbjct: 51  LVGVDKFGNKYYQKLGDTQYGRHRWVEYASKD--RYNASQVPAEWHGWLHFITDHTGDEL 108

Query: 389 PSRPHYKWMADHTENLSGTTAQYVPYS---TTRPKVEAW 496
            S    ++  +H EN SG    Y+ +S   T  P  + W
Sbjct: 109 LSLKPKRYGLEHKENFSGEGDAYIYHSKGHTLNPGQKNW 147


>At4g26965.1 68417.m03880 NADH:ubiquinone oxidoreductase family
           protein contains Pfam profile PF05071: NADH:ubiquinone
           oxidoreductase 17.2 kD subunit
          Length = 184

 Score = 35.9 bits (79), Expect = 0.035
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = +2

Query: 215 VGEDKYGNKYY---ENPRFFYSRNRWVEYSDKYYLNYDGSQVPAEWFGWLH 358
           +G DK GNKY+   E    F    RWV    K+    D + +P EW  WL+
Sbjct: 18  IGVDKTGNKYFSRMEEIDGFVKEKRWV----KFRREEDPTSIPVEWICWLN 64


>At3g51570.1 68416.m05648 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1226

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -1

Query: 127 NCLACRGLKTFPETFLWILRQPIYDVAKNLKEFPIVXRN 11
           N   C  LK+ PE  L  L   I     NLKEF ++ +N
Sbjct: 683 NLKGCTSLKSLPEINLVSLEILILSNCSNLKEFRVISQN 721


>At4g34900.1 68417.m04949 xanthine dehydrogenase, putative similar
           to xanthine dehydrogenase from Gallus gallus, PIR:XOCHDH
           [SP|P47990], from Calliphora vicina [SP|P08793];
           contains Pfam profile PF02738 Aldehyde oxidase and
           xanthine dehydrogenase, molybdopterin binding domain
          Length = 1364

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
 Frame = -3

Query: 308 SNTCPSTRPICSCCKRNVGSHSICYHICLLQLEHRPLHRPACIVYTXEALI-PPF*RITL 132
           SN CPST   CSC  +     + C       + +  +       YT + LI PP   + L
Sbjct: 197 SNICPSTGKPCSCGSKTTSEAATCNEDRFQSISYSDIDGAK---YTDKELIFPP--ELLL 251

Query: 131 KKLLSLSRAKN 99
           +KL  L    N
Sbjct: 252 RKLAPLKLGGN 262


>At4g33530.1 68417.m04765 potassium transporter family protein
           similar to K+ transporter HAK5 [Arabidopsis thaliana]
           GI:7108597; KUP/HAK/KT Transporter family member,
           PMID:11500563; contains Pfam profile PF02705: K+
           potassium transporter
          Length = 855

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
 Frame = +3

Query: 36  LRFLATS*IGCRNIHKNVSG--KVFSPRQAKQFF*RNSSERWYKSLXCI 176
           L F   + IG  N+ K  S   K F+P     FF RNS   WY    C+
Sbjct: 309 LWFFCLAGIGIYNLVKYDSSVFKAFNPAYIYFFFKRNSVNAWYALGGCV 357


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,030,349
Number of Sequences: 28952
Number of extensions: 386108
Number of successful extensions: 1015
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1013
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2038669600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)