Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_P07
(870 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5UAT5 Cluster: 60S ribosomal protein L6; n=15; Bilater... 215 9e-55
UniRef50_Q02878 Cluster: 60S ribosomal protein L6; n=71; Euteleo... 95 2e-18
UniRef50_Q9V9W3 Cluster: 60S ribosomal protein L6; n=6; Metazoa|... 94 5e-18
UniRef50_Q6B8B0 Cluster: 60S ribosomal protein L6; n=1; Ixodes p... 87 7e-16
UniRef50_A7S4S4 Cluster: Predicted protein; n=5; Eukaryota|Rep: ... 77 4e-13
UniRef50_A7L698 Cluster: 60S ribosomal protein L6; n=1; Artemia ... 63 1e-08
UniRef50_Q7XY83 Cluster: 60S ribosomal protein L6; n=1; Griffith... 58 2e-07
UniRef50_Q1DRV0 Cluster: 60S ribosomal protein L6; n=15; Pezizom... 47 7e-04
UniRef50_Q54D63 Cluster: 60S ribosomal protein L6; n=2; Eukaryot... 46 0.001
UniRef50_Q5DE99 Cluster: 60S ribosomal protein L6; n=1; Schistos... 46 0.001
UniRef50_A3F4R4 Cluster: 60S ribosomal protein L6; n=1; Taenia a... 46 0.001
UniRef50_Q4N3I8 Cluster: 60S ribosomal protein L6e, putative; n=... 44 0.005
UniRef50_Q9C9C6 Cluster: 60S ribosomal protein L6-2; n=11; Eukar... 43 0.012
UniRef50_UPI0000DC20AA Cluster: UPI0000DC20AA related cluster; n... 42 0.027
UniRef50_Q7SH22 Cluster: 60S ribosomal protein L6; n=2; Sordaria... 42 0.027
UniRef50_Q01IK4 Cluster: 60S ribosomal protein L6; n=17; Eukaryo... 41 0.036
UniRef50_Q02326 Cluster: 60S ribosomal protein L6-A; n=16; Dikar... 41 0.047
UniRef50_A5C5P0 Cluster: 60S ribosomal protein L6; n=1; Vitis vi... 39 0.14
UniRef50_Q5CM54 Cluster: 60S ribosomal protein L6; n=2; Cryptosp... 39 0.14
UniRef50_Q4Q4D3 Cluster: 60S ribosomal protein L6, putative; n=1... 39 0.19
UniRef50_A2EBD1 Cluster: 60S ribosomal protein L6, putative; n=7... 38 0.33
UniRef50_A0N0S1 Cluster: 60S ribosomal protein L6; n=1; Strongyl... 37 0.58
UniRef50_A0CYT3 Cluster: 60S ribosomal protein L6; n=5; Oligohym... 37 0.58
UniRef50_Q7QVA1 Cluster: 60S ribosomal protein L27; n=1; Giardia... 37 0.77
UniRef50_Q4X638 Cluster: 60S ribosomal subunit protein L6e, puta... 35 2.3
UniRef50_P47991 Cluster: 60S ribosomal protein L6; n=2; Caenorha... 35 2.3
UniRef50_Q5FTA6 Cluster: Putative sugar kinase protein; n=1; Glu... 35 3.1
UniRef50_A0YN15 Cluster: Putative uncharacterized protein; n=1; ... 35 3.1
UniRef50_Q2UBB7 Cluster: Predicted protein; n=1; Aspergillus ory... 35 3.1
UniRef50_Q9VD38 Cluster: CG13860-PA; n=2; Sophophora|Rep: CG1386... 34 5.4
UniRef50_A7ET80 Cluster: Putative uncharacterized protein; n=1; ... 34 5.4
>UniRef50_Q5UAT5 Cluster: 60S ribosomal protein L6; n=15;
Bilateria|Rep: 60S ribosomal protein L6 - Bombyx mori
(Silk moth)
Length = 273
Score = 215 bits (526), Expect = 9e-55
Identities = 104/115 (90%), Positives = 104/115 (90%)
Frame = +2
Query: 161 RNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTVPL 340
RNYDLGNGVMRFSKSKMFHKKAKYKFIG LTVVVKQIGGEKNGGTRTVPL
Sbjct: 30 RNYDLGNGVMRFSKSKMFHKKAKYKFIGKKNPKPEKPKKLTVVVKQIGGEKNGGTRTVPL 89
Query: 341 KRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVG 505
KRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVG
Sbjct: 90 KRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVG 144
Score = 64.5 bits (150), Expect = 3e-09
Identities = 30/36 (83%), Positives = 31/36 (86%)
Frame = +3
Query: 531 VTGPFAFNSCPLRRIPQRYVICTSTRISLGQLQPXK 638
VTGPFAFNSCPLRRIPQRYVI TSTRISLG + K
Sbjct: 153 VTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPK 188
Score = 61.3 bits (142), Expect = 3e-08
Identities = 31/60 (51%), Positives = 31/60 (51%)
Frame = +1
Query: 619 GNFNLXKHFNDXYFXKNXKCVKRTVXPXXGX*XLCQXXXXYVPFXQXKTDXKXXXXAXXK 798
GNF L KHFND YF KN KCVKRTV G YVP Q KTD K A K
Sbjct: 182 GNFKLPKHFNDDYFKKNKKCVKRTVKRKEGDDIFATKKEKYVPSEQRKTDQKTVDEAVIK 241
>UniRef50_Q02878 Cluster: 60S ribosomal protein L6; n=71;
Euteleostomi|Rep: 60S ribosomal protein L6 - Homo
sapiens (Human)
Length = 288
Score = 95.1 bits (226), Expect = 2e-18
Identities = 60/163 (36%), Positives = 82/163 (50%), Gaps = 6/163 (3%)
Frame = +2
Query: 161 RNYDLGNGVMRFSKSKMFHKKA----KYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTR 328
RN L G+ R+S+S M+ +KA KY L V K +GG+KNGGTR
Sbjct: 46 RNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTR 105
Query: 329 TVPLKRRKSFYPTQEKIRA--SSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLV 502
V L++ +YPT++ R S G +PFS+HVR++R ++ GT+ I+L GRH GKRVV +
Sbjct: 106 VVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKRVVFL 165
Query: 503 GNSAQRSAFSYWTFCIQFVPATPHSSALCDLHLHQNFTRATST 631
A + VP HQ F ATST
Sbjct: 166 KQLASGLLLVTGPLVLNRVPLR---------RTHQKFVIATST 199
Score = 39.9 bits (89), Expect = 0.082
Identities = 18/38 (47%), Positives = 24/38 (63%)
Frame = +3
Query: 531 VTGPFAFNSCPLRRIPQRYVICTSTRISLGQLQPXKTL 644
VTGP N PLRR Q++VI TST+I + ++ K L
Sbjct: 175 VTGPLVLNRVPLRRTHQKFVIATSTKIDISNVKIPKHL 212
>UniRef50_Q9V9W3 Cluster: 60S ribosomal protein L6; n=6;
Metazoa|Rep: 60S ribosomal protein L6 - Drosophila
melanogaster (Fruit fly)
Length = 262
Score = 93.9 bits (223), Expect = 5e-18
Identities = 50/113 (44%), Positives = 67/113 (59%)
Frame = +2
Query: 164 NYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTVPLK 343
N L G++R+SK++M+ ++A Y+ VK+IGG KNGG RTV LK
Sbjct: 23 NSYLKGGILRYSKAQMYKRRALYRLKDKKSPVVEKAKVPIKKVKKIGGPKNGGERTVFLK 82
Query: 344 RRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLV 502
+ K+ YPT+ ++ FS+H R R NL GTV ILLAGRH GKRVVL+
Sbjct: 83 KSKASYPTKTFVKKRPSKANFSEHKRNTRRNLTPGTVLILLAGRHQGKRVVLL 135
Score = 52.8 bits (121), Expect = 1e-05
Identities = 22/30 (73%), Positives = 26/30 (86%)
Frame = +3
Query: 531 VTGPFAFNSCPLRRIPQRYVICTSTRISLG 620
VTGPFA NSCPLRR+ QRYVI TS+++ LG
Sbjct: 145 VTGPFALNSCPLRRVSQRYVIGTSSKVDLG 174
>UniRef50_Q6B8B0 Cluster: 60S ribosomal protein L6; n=1; Ixodes
pacificus|Rep: 60S ribosomal protein L6 - Ixodes
pacificus (western blacklegged tick)
Length = 268
Score = 86.6 bits (205), Expect = 7e-16
Identities = 47/116 (40%), Positives = 67/116 (57%), Gaps = 2/116 (1%)
Frame = +2
Query: 161 RNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTVPL 340
+N+ L GV FS+SKMFHK+ +K V VK++ GEKNGG R +PL
Sbjct: 26 KNHKLPGGVWLFSRSKMFHKRGLFKVKHAAPTKEKRKRKKRVTVKRVKGEKNGGKRVLPL 85
Query: 341 KRRKSFYPTQE--KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLV 502
K+ + YPT++ + + +S +P S+ +R + GTV ILLAG H GKRVV +
Sbjct: 86 KKERRSYPTEDSPQHKRTSHMKPSSRTRVALRKRITPGTVLILLAGPHRGKRVVFL 141
Score = 46.0 bits (104), Expect = 0.001
Identities = 19/33 (57%), Positives = 25/33 (75%)
Frame = +3
Query: 531 VTGPFAFNSCPLRRIPQRYVICTSTRISLGQLQ 629
VTGP+ N CPLRRI Q YVI TST++ L +++
Sbjct: 151 VTGPYGVNGCPLRRINQIYVIATSTKLDLSKVK 183
>UniRef50_A7S4S4 Cluster: Predicted protein; n=5; Eukaryota|Rep:
Predicted protein - Nematostella vectensis
Length = 244
Score = 77.4 bits (182), Expect = 4e-13
Identities = 45/114 (39%), Positives = 63/114 (55%)
Frame = +2
Query: 161 RNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTVPL 340
RN +L G+ R+S+S ++ K+A YK T K IGG+KNGG R VP+
Sbjct: 11 RNPELAPGISRYSRSAIYKKRALYKRKKTGVKKVVQDEPRTKT-KDIGGDKNGGKRVVPV 69
Query: 341 KRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLV 502
+R +YPT E +R R + ++R ++ GTV ILLAG H GKRVV +
Sbjct: 70 QRESRYYPT-EDVRRRLANRK-KPGMAKLRSSITPGTVLILLAGAHRGKRVVFL 121
Score = 46.0 bits (104), Expect = 0.001
Identities = 20/33 (60%), Positives = 23/33 (69%)
Frame = +3
Query: 531 VTGPFAFNSCPLRRIPQRYVICTSTRISLGQLQ 629
VTGPF N PLRRIPQ YVI TST I + ++
Sbjct: 131 VTGPFKINGVPLRRIPQSYVIATSTHIDVSDVK 163
>UniRef50_A7L698 Cluster: 60S ribosomal protein L6; n=1; Artemia
franciscana|Rep: 60S ribosomal protein L6 - Artemia
sanfranciscana (Brine shrimp) (Artemia franciscana)
Length = 241
Score = 62.9 bits (146), Expect = 1e-08
Identities = 32/73 (43%), Positives = 47/73 (64%)
Frame = +2
Query: 284 VVVKQIGGEKNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCIL 463
V+ K+IGG+KNGGTR V ++ FYP + + +K+ +IR +L+ GT+ IL
Sbjct: 44 VIEKKIGGDKNGGTRLVSTRKPPQFYPINSRQKRFHRRLVNNKNPPKIRKSLQPGTILIL 103
Query: 464 LAGRHAGKRVVLV 502
LAG + GKRVVL+
Sbjct: 104 LAGVNRGKRVVLL 116
Score = 37.5 bits (83), Expect = 0.44
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = +3
Query: 531 VTGPFAFNSCPLRRIPQRYVICTSTRISLGQLQ 629
V+GP N PLRR+ Q+ VI TSTRI + ++
Sbjct: 126 VSGPLKVNRVPLRRVHQKLVIATSTRIDISNVK 158
>UniRef50_Q7XY83 Cluster: 60S ribosomal protein L6; n=1; Griffithsia
japonica|Rep: 60S ribosomal protein L6 - Griffithsia
japonica (Red alga)
Length = 216
Score = 58.4 bits (135), Expect = 2e-07
Identities = 32/97 (32%), Positives = 49/97 (50%)
Frame = +2
Query: 278 LTVVVKQIGGEKNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVC 457
+ ++ K IGG KNGG R VP K+ +YP +K + R ++RP++K GT+
Sbjct: 20 IKMIKKPIGGAKNGGYRLVPEKKGPKWYPADDK-KTPVPSRKNVHKPTKLRPSIKSGTIV 78
Query: 458 ILLAGRHAGKRVVLVGNSAQRSAFSYWTFCIQFVPAT 568
ILLAG G RVV++ + + +P T
Sbjct: 79 ILLAGVFRGSRVVVLKQLDSGQLLVTGPYAVNRIPLT 115
Score = 42.7 bits (96), Expect = 0.012
Identities = 19/36 (52%), Positives = 24/36 (66%)
Frame = +3
Query: 531 VTGPFAFNSCPLRRIPQRYVICTSTRISLGQLQPXK 638
VTGP+A N PL R+ QRYVI TST I + ++ K
Sbjct: 103 VTGPYAVNRIPLTRVDQRYVIATSTSIDVSKVDVKK 138
>UniRef50_Q1DRV0 Cluster: 60S ribosomal protein L6; n=15;
Pezizomycotina|Rep: 60S ribosomal protein L6 -
Coccidioides immitis
Length = 206
Score = 46.8 bits (106), Expect = 7e-04
Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 4/98 (4%)
Frame = +2
Query: 281 TVVVKQIGGEKN--GGTRTVPLKRRKS--FYPTQEKIRASSGGRPFSKHVRRIRPNLKIG 448
T+ K +G K G R +P +K+ +YP ++ + + + H ++RP+L+ G
Sbjct: 4 TLDSKSVGQTKKFGKGERVIPHPSQKAQKWYPADDEPQPKKARK--TAHPTKLRPSLQPG 61
Query: 449 TVCILLAGRHAGKRVVLVGNSAQRSAFSYWTFCIQFVP 562
T+ ILLAGR GKRV+L+ + Q F + VP
Sbjct: 62 TILILLAGRFRGKRVILLKHLGQGVLLVTGPFKLNGVP 99
Score = 41.1 bits (92), Expect = 0.036
Identities = 20/39 (51%), Positives = 25/39 (64%)
Frame = +3
Query: 531 VTGPFAFNSCPLRRIPQRYVICTSTRISLGQLQPXKTLQ 647
VTGPF N PLRR+ RYVI TS+ + L + KTL+
Sbjct: 89 VTGPFKLNGVPLRRVNARYVIATSSTVDLNGVD-QKTLE 126
>UniRef50_Q54D63 Cluster: 60S ribosomal protein L6; n=2;
Eukaryota|Rep: 60S ribosomal protein L6 - Dictyostelium
discoideum AX4
Length = 236
Score = 46.4 bits (105), Expect = 0.001
Identities = 20/38 (52%), Positives = 26/38 (68%)
Frame = +3
Query: 531 VTGPFAFNSCPLRRIPQRYVICTSTRISLGQLQPXKTL 644
+TGPF N PLRRI QRYVI TST+I + ++ T+
Sbjct: 122 ITGPFKVNGVPLRRIDQRYVIATSTKIDVSSVKVAATI 159
Score = 34.7 bits (76), Expect = 3.1
Identities = 22/59 (37%), Positives = 32/59 (54%)
Frame = +2
Query: 320 GTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVV 496
G R + K K +IR+++ + K +R ++ GTV I+LAGR AGKRVV
Sbjct: 54 GKRVIAAKASKFAPSIPAEIRSTAAKKVQQKVA--LRKSITPGTVLIILAGRFAGKRVV 110
>UniRef50_Q5DE99 Cluster: 60S ribosomal protein L6; n=1; Schistosoma
japonicum|Rep: 60S ribosomal protein L6 - Schistosoma
japonicum (Blood fluke)
Length = 238
Score = 46.0 bits (104), Expect = 0.001
Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Frame = +2
Query: 335 PLKRRKSFYPTQE---KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLV 502
P R Y TQ+ K+R + FS HVR+IR +++ GTV ILLAG H GKRV+ +
Sbjct: 55 PKTRFPRSYVTQQGKRKLRLRRA-KCFSNHVRKIRSSIQPGTVLILLAGPHKGKRVIFL 112
Score = 45.2 bits (102), Expect = 0.002
Identities = 20/36 (55%), Positives = 24/36 (66%)
Frame = +3
Query: 531 VTGPFAFNSCPLRRIPQRYVICTSTRISLGQLQPXK 638
VTGPF +N PLRR+ Q YVI TSTRI + + K
Sbjct: 122 VTGPFKYNGVPLRRVNQCYVIATSTRIDISKFDVPK 157
>UniRef50_A3F4R4 Cluster: 60S ribosomal protein L6; n=1; Taenia
asiatica|Rep: 60S ribosomal protein L6 - Taenia asiatica
(Asian tapeworm)
Length = 212
Score = 46.0 bits (104), Expect = 0.001
Identities = 19/33 (57%), Positives = 24/33 (72%)
Frame = +3
Query: 531 VTGPFAFNSCPLRRIPQRYVICTSTRISLGQLQ 629
VTGPF +N PLRR+ QRYVI T TRI + ++
Sbjct: 128 VTGPFKYNGVPLRRVNQRYVIATKTRIKIKNIK 160
Score = 40.3 bits (90), Expect = 0.062
Identities = 20/37 (54%), Positives = 25/37 (67%)
Frame = +2
Query: 404 FSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGNSA 514
F+ H RRIR ++ G V ILLAGRH KRVV + + A
Sbjct: 86 FADHRRRIRKSITPGKVLILLAGRHRAKRVVFLKSLA 122
>UniRef50_Q4N3I8 Cluster: 60S ribosomal protein L6e, putative; n=3;
Piroplasmida|Rep: 60S ribosomal protein L6e, putative -
Theileria parva
Length = 212
Score = 44.0 bits (99), Expect = 0.005
Identities = 18/27 (66%), Positives = 21/27 (77%)
Frame = +3
Query: 531 VTGPFAFNSCPLRRIPQRYVICTSTRI 611
VTGPF+FN PLRR+ RYVI TST +
Sbjct: 75 VTGPFSFNGVPLRRVNSRYVIATSTNV 101
Score = 37.5 bits (83), Expect = 0.44
Identities = 24/57 (42%), Positives = 33/57 (57%)
Frame = +2
Query: 332 VPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLV 502
V L RRK+ K + GR ++ V ++R +LK G V ILL G + GKRVVL+
Sbjct: 12 VKLNRRKTVVTRLGKTKVV--GRKYAS-VPKVRESLKPGAVLILLTGSYKGKRVVLL 65
>UniRef50_Q9C9C6 Cluster: 60S ribosomal protein L6-2; n=11;
Eukaryota|Rep: 60S ribosomal protein L6-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 233
Score = 42.7 bits (96), Expect = 0.012
Identities = 37/134 (27%), Positives = 59/134 (44%)
Frame = +2
Query: 161 RNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTVPL 340
RN DL GV ++S+S+M+HK+ + + V P+
Sbjct: 12 RNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKV-------------DAPV 58
Query: 341 KRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGNSAQR 520
++ FYP ++ ++ R +K + +R ++ GTV I+LAGR GKRVV + A
Sbjct: 59 EKPPKFYPAED-VKKPLPNRRTAKPAK-LRASITPGTVLIILAGRFKGKRVVFLKQLASG 116
Query: 521 SAFSYWTFCIQFVP 562
F I VP
Sbjct: 117 LLLVTGPFKINGVP 130
Score = 40.7 bits (91), Expect = 0.047
Identities = 17/29 (58%), Positives = 21/29 (72%)
Frame = +3
Query: 531 VTGPFAFNSCPLRRIPQRYVICTSTRISL 617
VTGPF N PLRR+ Q YVI TST++ +
Sbjct: 120 VTGPFKINGVPLRRVNQAYVIGTSTKVDI 148
>UniRef50_UPI0000DC20AA Cluster: UPI0000DC20AA related cluster; n=2;
Rattus norvegicus|Rep: UPI0000DC20AA UniRef100 entry -
Rattus norvegicus
Length = 261
Score = 41.5 bits (93), Expect = 0.027
Identities = 32/114 (28%), Positives = 54/114 (47%)
Frame = +2
Query: 161 RNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTVPL 340
RN L G R+S ++ +K Y + + V+K + G+KNGGT V L
Sbjct: 49 RNPILVRGTGRYSIKALYERK--YSAVKSKCEKKKKEKVVATVIKTVSGDKNGGTGVVKL 106
Query: 341 KRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLV 502
++ K + + + + S P KH + + N TV I++ G+H +RVV +
Sbjct: 107 QKMKMYLGSCKAMAKS----PAFKHEKAV-CNSTPETVLIIITGQH--RRVVFL 153
>UniRef50_Q7SH22 Cluster: 60S ribosomal protein L6; n=2;
Sordariaceae|Rep: 60S ribosomal protein L6 - Neurospora
crassa
Length = 207
Score = 41.5 bits (93), Expect = 0.027
Identities = 18/36 (50%), Positives = 22/36 (61%)
Frame = +3
Query: 531 VTGPFAFNSCPLRRIPQRYVICTSTRISLGQLQPXK 638
VTGPF N PLRR+ RYVI TS ++ L + K
Sbjct: 70 VTGPFKINGVPLRRVNARYVIATSQKVDLAGIDEAK 105
Score = 34.7 bits (76), Expect = 3.1
Identities = 20/37 (54%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = +2
Query: 398 RPFSKHVRRIRPNLKI--GTVCILLAGRHAGKRVVLV 502
RP K +R P + GTV ILLAGR GKRVVL+
Sbjct: 24 RPVRKTIRPWSPRSTLVPGTVLILLAGRFRGKRVVLL 60
>UniRef50_Q01IK4 Cluster: 60S ribosomal protein L6; n=17;
Eukaryota|Rep: 60S ribosomal protein L6 - Oryza sativa
(Rice)
Length = 222
Score = 41.1 bits (92), Expect = 0.036
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = +3
Query: 531 VTGPFAFNSCPLRRIPQRYVICTSTRISLGQLQPXK 638
VTGPF N P+RR+ Q YVI TST++ + + K
Sbjct: 109 VTGPFKINGVPIRRVNQPYVIATSTKVDISGVNVEK 144
Score = 35.9 bits (79), Expect = 1.3
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +2
Query: 356 FYPTQE-KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLV 502
FYP + K R S +P + ++R ++ GTV ILLAGR GKRVV +
Sbjct: 53 FYPADDVKPRQPSTRKP---NPTKLRSSITPGTVLILLAGRFMGKRVVFL 99
>UniRef50_Q02326 Cluster: 60S ribosomal protein L6-A; n=16;
Dikarya|Rep: 60S ribosomal protein L6-A - Saccharomyces
cerevisiae (Baker's yeast)
Length = 176
Score = 40.7 bits (91), Expect = 0.047
Identities = 16/29 (55%), Positives = 22/29 (75%)
Frame = +3
Query: 531 VTGPFAFNSCPLRRIPQRYVICTSTRISL 617
++GPF N PLRR+ RYVI TST++S+
Sbjct: 65 ISGPFKVNGVPLRRVNARYVIATSTKVSV 93
Score = 35.1 bits (77), Expect = 2.3
Identities = 23/74 (31%), Positives = 40/74 (54%)
Frame = +2
Query: 341 KRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGNSAQR 520
++ +YP+++ + A R ++ +++R +L GTV ILLAGR GKRVV + +
Sbjct: 4 QKAPKWYPSED-VAALKKTRKAARP-QKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDN 61
Query: 521 SAFSYWTFCIQFVP 562
+ F + VP
Sbjct: 62 TLLISGPFKVNGVP 75
>UniRef50_A5C5P0 Cluster: 60S ribosomal protein L6; n=1; Vitis
vinifera|Rep: 60S ribosomal protein L6 - Vitis vinifera
(Grape)
Length = 249
Score = 39.1 bits (87), Expect = 0.14
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = +3
Query: 531 VTGPFAFNSCPLRRIPQRYVICTSTRISLGQLQPXK 638
+TG F N PLRR+ Q YVI TST++ + ++ K
Sbjct: 171 ITGSFKINGVPLRRVNQAYVIATSTKVDIPKVNVEK 206
>UniRef50_Q5CM54 Cluster: 60S ribosomal protein L6; n=2;
Cryptosporidium|Rep: 60S ribosomal protein L6 -
Cryptosporidium hominis
Length = 184
Score = 39.1 bits (87), Expect = 0.14
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +3
Query: 531 VTGPFAFNSCPLRRIPQRYVICTSTRISLGQLQPXK 638
VTGP+A N P+RR+ Y+I TST++ + + K
Sbjct: 70 VTGPYALNGVPVRRVNPAYIIATSTKVDVSKADVSK 105
Score = 36.7 bits (81), Expect = 0.77
Identities = 19/41 (46%), Positives = 26/41 (63%)
Frame = +2
Query: 380 RASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLV 502
R S R S ++R +L+ G VCILLAG + GKRVV++
Sbjct: 20 RKYSSRRKASVVAPKLRSSLQPGVVCILLAGPYKGKRVVML 60
>UniRef50_Q4Q4D3 Cluster: 60S ribosomal protein L6, putative; n=11;
Trypanosomatidae|Rep: 60S ribosomal protein L6, putative
- Leishmania major
Length = 195
Score = 38.7 bits (86), Expect = 0.19
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +3
Query: 531 VTGPFAFNSCPLRRIPQRYVICTSTRISLGQL 626
V+GP +N P+RRI RYVI TST + + +
Sbjct: 65 VSGPMKYNGVPIRRIDSRYVIATSTTVDISSV 96
>UniRef50_A2EBD1 Cluster: 60S ribosomal protein L6, putative; n=7;
Trichomonas vaginalis G3|Rep: 60S ribosomal protein L6,
putative - Trichomonas vaginalis G3
Length = 151
Score = 37.9 bits (84), Expect = 0.33
Identities = 15/27 (55%), Positives = 21/27 (77%)
Frame = +2
Query: 428 RPNLKIGTVCILLAGRHAGKRVVLVGN 508
RP+LK+GTV I++ G H GKR V+V +
Sbjct: 53 RPSLKVGTVVIVVGGEHQGKRAVVVAD 79
>UniRef50_A0N0S1 Cluster: 60S ribosomal protein L6; n=1;
Strongyloides papillosus|Rep: 60S ribosomal protein L6 -
Strongyloides papillosus
Length = 127
Score = 37.1 bits (82), Expect = 0.58
Identities = 15/36 (41%), Positives = 25/36 (69%)
Frame = +3
Query: 537 GPFAFNSCPLRRIPQRYVICTSTRISLGQLQPXKTL 644
GPF+ N P+RRI Q++V+ TST+I + ++ T+
Sbjct: 15 GPFSINGVPVRRIAQKFVLPTSTKIDVSGVKIPATM 50
>UniRef50_A0CYT3 Cluster: 60S ribosomal protein L6; n=5;
Oligohymenophorea|Rep: 60S ribosomal protein L6 -
Paramecium tetraurelia
Length = 208
Score = 37.1 bits (82), Expect = 0.58
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +3
Query: 531 VTGPFAFNSCPLRRIPQRYVICTSTRISL 617
VTGPF N PL+R+ YVI TST++ +
Sbjct: 89 VTGPFKINGVPLKRVNSAYVIPTSTKVDV 117
>UniRef50_Q7QVA1 Cluster: 60S ribosomal protein L27; n=1; Giardia
lamblia ATCC 50803|Rep: 60S ribosomal protein L27 -
Giardia lamblia ATCC 50803
Length = 135
Score = 36.7 bits (81), Expect = 0.77
Identities = 15/25 (60%), Positives = 20/25 (80%)
Frame = +2
Query: 428 RPNLKIGTVCILLAGRHAGKRVVLV 502
+P +K G VCI+L GRHAGK+ V+V
Sbjct: 3 QPIIKPGLVCIVLQGRHAGKKAVIV 27
>UniRef50_Q4X638 Cluster: 60S ribosomal subunit protein L6e,
putative; n=5; Plasmodium|Rep: 60S ribosomal subunit
protein L6e, putative - Plasmodium chabaudi
Length = 241
Score = 35.1 bits (77), Expect = 2.3
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Frame = +2
Query: 287 VVKQIGGEKNGGTRTVPLKRRKSFYPTQEK--IRASSGGRPFS---KHV--RRIRPNLKI 445
VV G +KN V ++K P + K I GR + K V R++R ++++
Sbjct: 17 VVPATGDKKNALKHYVIKGQKKILTPVRAKKTISKKHYGRKLASKKKFVVQRKMRSSIQV 76
Query: 446 GTVCILLAGRHAGKRVVL 499
G V I+L G+H GKR ++
Sbjct: 77 GKVAIILTGKHMGKRCII 94
Score = 34.7 bits (76), Expect = 3.1
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +3
Query: 531 VTGPFAFNSCPLRRIPQRYVICTSTRI 611
V GP+ N PL+R+ RY+I TST I
Sbjct: 105 VVGPYEVNGVPLKRVDPRYLIVTSTNI 131
>UniRef50_P47991 Cluster: 60S ribosomal protein L6; n=2;
Caenorhabditis|Rep: 60S ribosomal protein L6 -
Caenorhabditis elegans
Length = 217
Score = 35.1 bits (77), Expect = 2.3
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +3
Query: 531 VTGPFAFNSCPLRRIPQRYVICTSTRISL 617
VTGP N PLRRI Q +VI TS ++++
Sbjct: 103 VTGPHKINGFPLRRIGQAFVIATSLKVNV 131
Score = 34.7 bits (76), Expect = 3.1
Identities = 16/26 (61%), Positives = 19/26 (73%)
Frame = +2
Query: 425 IRPNLKIGTVCILLAGRHAGKRVVLV 502
+R L GTV I+LAGRH GKRVV +
Sbjct: 67 LRKTLTPGTVLIVLAGRHKGKRVVFL 92
>UniRef50_Q5FTA6 Cluster: Putative sugar kinase protein; n=1;
Gluconobacter oxydans|Rep: Putative sugar kinase protein
- Gluconobacter oxydans (Gluconobacter suboxydans)
Length = 326
Score = 34.7 bits (76), Expect = 3.1
Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 1/104 (0%)
Frame = +2
Query: 284 VVVKQIGGEKNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCIL 463
V ++ + G +G V R + K+ A G F++ +R + + +
Sbjct: 52 VDIENVTGGGSGANTAVVAARMGAKVAYLGKVTADEAGDHFTRDIRE--QGITFPSEPLP 109
Query: 464 LA-GRHAGKRVVLVGNSAQRSAFSYWTFCIQFVPATPHSSALCD 592
A G + +VLV QR+ F+Y C +F P H S + D
Sbjct: 110 AADGTPTARCIVLVTPEGQRTMFTYLGACTEFTPQDVHESVVAD 153
>UniRef50_A0YN15 Cluster: Putative uncharacterized protein; n=1;
Lyngbya sp. PCC 8106|Rep: Putative uncharacterized
protein - Lyngbya sp. PCC 8106
Length = 448
Score = 34.7 bits (76), Expect = 3.1
Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 13/103 (12%)
Frame = +2
Query: 302 GGEKNGGTRTVPLKRRKSFYPTQEKIR--ASSGGRPFSKHVRRIRPNLKIGTV-----CI 460
GG GG PL R SF+ +++ R + G F K ++R++ ++ + CI
Sbjct: 217 GGFSWGGV-LAPL-RTLSFWKMKDRARQFGEAAGHEFLKDLQRVKEEVRFHLIGHSFGCI 274
Query: 461 LLAGRHAGKRVVLVGNSAQRS------AFSYWTFCIQFVPATP 571
+L+G AG+ V S AFS+W++C Q +P TP
Sbjct: 275 VLSGMLAGQNNWGVLERPVHSLFLIQGAFSHWSYC-QDIPVTP 316
>UniRef50_Q2UBB7 Cluster: Predicted protein; n=1; Aspergillus
oryzae|Rep: Predicted protein - Aspergillus oryzae
Length = 547
Score = 34.7 bits (76), Expect = 3.1
Identities = 19/53 (35%), Positives = 30/53 (56%)
Frame = -3
Query: 577 GMRRSGHELNAKGPVTKSRPLGRIPNKYNPLACMSTSEENANSSYLQVGSDPA 419
G++ G++L + P+ + PLGRIP LA + T++E SY Q S P+
Sbjct: 70 GLKCEGYDL-CRLPIKRKSPLGRIPEVELCLAWVPTADERRCFSYFQYRSIPS 121
>UniRef50_Q9VD38 Cluster: CG13860-PA; n=2; Sophophora|Rep:
CG13860-PA - Drosophila melanogaster (Fruit fly)
Length = 189
Score = 33.9 bits (74), Expect = 5.4
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = -3
Query: 538 PVTKSRPLGRIPNKYNPLACMSTSEENANSSYLQ 437
P + S+PL +P KY P +C+S EEN SY Q
Sbjct: 73 PTSHSQPL-YVPGKYLPSSCLSNREENEIYSYTQ 105
>UniRef50_A7ET80 Cluster: Putative uncharacterized protein; n=1;
Sclerotinia sclerotiorum 1980|Rep: Putative
uncharacterized protein - Sclerotinia sclerotiorum 1980
Length = 752
Score = 33.9 bits (74), Expect = 5.4
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = +2
Query: 311 KNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLK 442
K R LK SF P + + ASS GRP K +R+R LK
Sbjct: 128 KEDHNREEELKAMVSFMPHRPAVDASSSGRPMKKDSKRMRNGLK 171
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 704,694,000
Number of Sequences: 1657284
Number of extensions: 12987260
Number of successful extensions: 30103
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 29193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30094
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 77472727479
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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