Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_P07
         (870 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924...    42   8e-04
04_04_0211 - 23636377-23636532,23636624-23636805,23637853-236379...    41   0.001
01_01_1174 + 9348256-9349734                                           30   2.1  

>02_04_0433 -
           22891261-22891509,22892181-22892301,22892405-22892496,
           22892692-22892755,22892855-22892920,22893102-22893193,
           22893991-22894050,22894181-22894270,22894484-22894613,
           22895066-22895157,22895299-22895373,22895663-22895754,
           22896496-22896586,22897541-22897574,22897745-22897791,
           22899110-22899209,22899300-22899436,22900837-22901015,
           22901146-22901188,22901264-22901297,22901839-22901948,
           22902043-22902224,22903062-22903168,22903266-22903480
          Length = 833

 Score = 41.5 bits (93), Expect = 8e-04
 Identities = 16/36 (44%), Positives = 24/36 (66%)
 Frame = +3

Query: 531 VTGPFAFNSCPLRRIPQRYVICTSTRISLGQLQPXK 638
           +TGPF  N  P+RR+ Q YVI TST++ +  ++  K
Sbjct: 106 ITGPFKINGVPIRRVNQAYVIATSTKVDISGVKVDK 141



 Score = 36.7 bits (81), Expect = 0.024
 Identities = 28/69 (40%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
 Frame = +2

Query: 311 KNGGTRTVPLK----RRKSFYPTQE-KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGR 475
           KNGGT     K        FYP  + K RA S  +    +  ++R  +  GTV ILLAGR
Sbjct: 31  KNGGTFPKAGKPAAAAEPKFYPADDVKPRAPSTRKA---NPTKLRSTITPGTVLILLAGR 87

Query: 476 HAGKRVVLV 502
           + GKRVV +
Sbjct: 88  YMGKRVVFL 96


>04_04_0211 -
           23636377-23636532,23636624-23636805,23637853-23637959,
           23637997-23638280
          Length = 242

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 17/36 (47%), Positives = 23/36 (63%)
 Frame = +3

Query: 531 VTGPFAFNSCPLRRIPQRYVICTSTRISLGQLQPXK 638
           VTGPF  N  P+RR+ Q YVI TST++ +  +   K
Sbjct: 129 VTGPFKINGVPIRRVNQPYVIATSTKVDISGVNVEK 164



 Score = 34.3 bits (75), Expect = 0.13
 Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
 Frame = +2

Query: 362 PTQEKIRASSGGRPFS--KHVRRIRPNLKIGTVCILLAGRHAGKRVVLV 502
           PT+ +  +SS    FS  + +  +R ++  GTV ILLAGR  GKRVV +
Sbjct: 71  PTKLRSPSSSNLPEFSLFRFILLMRSSITPGTVLILLAGRFMGKRVVFL 119


>01_01_1174 + 9348256-9349734
          Length = 492

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
 Frame = -1

Query: 591 SHSAEECGVAGTN*MQKVQ*LKA---DRWAEF-PTSTTLLPACLPARRMQTVPIFRLG 430
           S SA E G AG    +K    KA   D WA F      LLPA L A++   + + RLG
Sbjct: 432 SFSAAEQGAAGRGAARKRMSFKALSGDEWAAFLDRFEQLLPAALDAKKRAGLKLTRLG 489


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,805,954
Number of Sequences: 37544
Number of extensions: 394571
Number of successful extensions: 883
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)