Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_P07
         (870 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0)               40   0.003
SB_47767| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.5  
SB_48087| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.5  
SB_4086| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.5  
SB_38159| Best HMM Match : Peptidase_M28 (HMM E-Value=4.7e-09)         28   8.6  

>SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0)
          Length = 112

 Score = 39.9 bits (89), Expect = 0.003
 Identities = 17/30 (56%), Positives = 20/30 (66%)
 Frame = +3

Query: 540 PFAFNSCPLRRIPQRYVICTSTRISLGQLQ 629
           PF  N  PLRRIPQ YVI TST I +  ++
Sbjct: 2   PFKINGVPLRRIPQSYVIATSTHIDVSDVK 31


>SB_47767| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +3

Query: 561 PLRRIPQRYVICTSTR 608
           PLRR P RY IC  TR
Sbjct: 29  PLRRTPDRYAICDDTR 44


>SB_48087| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1396

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = +1

Query: 322 NQNSTPQ---T*EVLLPHSGENPCLIWWPSIQQACTQDPTQP 438
           NQ++ PQ   T  VL+PH G  PC+  +P+         TQP
Sbjct: 94  NQSTLPQGNATQWVLIPHKGSMPCIGTFPNAINTWIIPGTQP 135


>SB_4086| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2235

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +3

Query: 561 PLRRIPQRYVICTSTR 608
           PLRR P RY IC  TR
Sbjct: 33  PLRRTPDRYAICDDTR 48



 Score = 28.7 bits (61), Expect = 6.5
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +3

Query: 561 PLRRIPQRYVICTSTR 608
           PLRR P RY IC  TR
Sbjct: 106 PLRRTPDRYAICDDTR 121


>SB_38159| Best HMM Match : Peptidase_M28 (HMM E-Value=4.7e-09)
          Length = 1049

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -3

Query: 169 IVPGFFRRFFFSHRTCSCGSRLGHRFRLCWSHIQTGFKKKD 47
           I  G+ +  F++  + SCG    +R+R C S   +G +KKD
Sbjct: 27  IYDGWSQWSFWNLCSSSCGQGRRYRYRFCLSLTASGDQKKD 67


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,959,534
Number of Sequences: 59808
Number of extensions: 423167
Number of successful extensions: 1041
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1041
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2491217872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)