Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_P07
         (870 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal prote...    35   0.066
Z83102-9|CAI79156.1|   82|Caenorhabditis elegans Hypothetical pr...    31   1.1  
U51997-1|AAG24067.1|  572|Caenorhabditis elegans Activated in bl...    30   2.5  
U50312-4|AAA92321.1|  542|Caenorhabditis elegans Temporarily ass...    28   7.5  
Z81117-1|CAB03312.1|  431|Caenorhabditis elegans Hypothetical pr...    28   10.0 

>U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 6 protein.
          Length = 217

 Score = 35.1 bits (77), Expect = 0.066
 Identities = 15/29 (51%), Positives = 20/29 (68%)
 Frame = +3

Query: 531 VTGPFAFNSCPLRRIPQRYVICTSTRISL 617
           VTGP   N  PLRRI Q +VI TS ++++
Sbjct: 103 VTGPHKINGFPLRRIGQAFVIATSLKVNV 131



 Score = 34.7 bits (76), Expect = 0.087
 Identities = 16/26 (61%), Positives = 19/26 (73%)
 Frame = +2

Query: 425 IRPNLKIGTVCILLAGRHAGKRVVLV 502
           +R  L  GTV I+LAGRH GKRVV +
Sbjct: 67  LRKTLTPGTVLIVLAGRHKGKRVVFL 92



 Score = 29.9 bits (64), Expect = 2.5
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +2

Query: 161 RNYDLGNGVMRFSKSKMFHKKAKYK 235
           RN+DL  GV+RFS S++  KK + K
Sbjct: 12  RNFDLSPGVLRFSASRLRLKKGEKK 36


>Z83102-9|CAI79156.1|   82|Caenorhabditis elegans Hypothetical
           protein C54C8.12 protein.
          Length = 82

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +2

Query: 356 FYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKR 490
           FYPT+   +A S G P +       PN ++  V    A RHAG R
Sbjct: 26  FYPTEISTKARSHGHPVNTLGESEDPNFQVDNVPGERARRHAGPR 70


>U51997-1|AAG24067.1|  572|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 2 protein.
          Length = 572

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 15/51 (29%), Positives = 21/51 (41%)
 Frame = +1

Query: 373 ENPCLIWWPSIQQACTQDPTQPEDRNCLHSPRW*TCRQEGCTCWEFCPAVC 525
           +N C  + P  QQ C     QP    C       TC+Q    C + C ++C
Sbjct: 356 QNTCQQFAPVCQQQCASQCLQPAAPQCQQCQN--TCQQFAPVCEQQCASLC 404


>U50312-4|AAA92321.1|  542|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 38 protein.
          Length = 542

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 4/24 (16%)
 Frame = -3

Query: 115 GSRLGHRFRLCWS----HIQTGFK 56
           GSR GH   LCW+    H Q G+K
Sbjct: 379 GSRAGHNIALCWAAMLYHAQEGYK 402


>Z81117-1|CAB03312.1|  431|Caenorhabditis elegans Hypothetical
           protein T06E6.1 protein.
          Length = 431

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 559 HELNAKGPVTKSRPLGRIPNKYNPLACMS 473
           HE+    P  + RP+ +IP   NP+ C S
Sbjct: 191 HEMRLYDPRAQRRPVKKIPFMENPIMCTS 219


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,327,372
Number of Sequences: 27780
Number of extensions: 319563
Number of successful extensions: 704
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)