Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_P07
(870 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila... 43 3e-04
At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila... 43 3e-04
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila... 42 5e-04
At1g63560.1 68414.m07185 receptor-like protein kinase-related co... 31 1.0
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 30 2.3
At1g20540.1 68414.m02559 transducin family protein / WD-40 repea... 29 5.3
>At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar
to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
from [Cyanophora paradoxa]
Length = 233
Score = 42.7 bits (96), Expect = 3e-04
Identities = 37/134 (27%), Positives = 59/134 (44%)
Frame = +2
Query: 161 RNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTVPL 340
RN DL GV ++S+S+M+HK+ + + V P+
Sbjct: 12 RNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKV-------------DAPV 58
Query: 341 KRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGNSAQR 520
++ FYP ++ ++ R +K + +R ++ GTV I+LAGR GKRVV + A
Sbjct: 59 EKPPKFYPAED-VKKPLPNRRTAKPAK-LRASITPGTVLIILAGRFKGKRVVFLKQLASG 116
Query: 521 SAFSYWTFCIQFVP 562
F I VP
Sbjct: 117 LLLVTGPFKINGVP 130
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/29 (58%), Positives = 21/29 (72%)
Frame = +3
Query: 531 VTGPFAFNSCPLRRIPQRYVICTSTRISL 617
VTGPF N PLRR+ Q YVI TST++ +
Sbjct: 120 VTGPFKINGVPLRRVNQAYVIGTSTKVDI 148
>At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar
to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
from [Cyanophora paradoxa]
Length = 233
Score = 42.7 bits (96), Expect = 3e-04
Identities = 37/134 (27%), Positives = 59/134 (44%)
Frame = +2
Query: 161 RNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTVPL 340
RN DL GV ++S+S+M+HK+ + + V P+
Sbjct: 12 RNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKV-------------DAPV 58
Query: 341 KRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGNSAQR 520
++ FYP ++ ++ R +K + +R ++ GTV I+LAGR GKRVV + A
Sbjct: 59 EKPPKFYPAED-VKKPLPNRRTAKPTK-LRASITPGTVLIILAGRFKGKRVVFLKQLASG 116
Query: 521 SAFSYWTFCIQFVP 562
F I VP
Sbjct: 117 LLLVTGPFKINGVP 130
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/29 (58%), Positives = 21/29 (72%)
Frame = +3
Query: 531 VTGPFAFNSCPLRRIPQRYVICTSTRISL 617
VTGPF N PLRR+ Q YVI TST++ +
Sbjct: 120 VTGPFKINGVPLRRVNQAYVIGTSTKVDI 148
>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
to 60S ribosomal protein L6 GI:7208784 from [Cicer
arietinum]
Length = 233
Score = 41.9 bits (94), Expect = 5e-04
Identities = 19/36 (52%), Positives = 23/36 (63%)
Frame = +3
Query: 531 VTGPFAFNSCPLRRIPQRYVICTSTRISLGQLQPXK 638
VTGPF N PLRR+ Q YVI TST+I + + K
Sbjct: 120 VTGPFKINGVPLRRVNQAYVIGTSTKIDISGVNTEK 155
Score = 37.9 bits (84), Expect = 0.009
Identities = 31/114 (27%), Positives = 52/114 (45%)
Frame = +2
Query: 161 RNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTVPL 340
RN DL GV ++S+S+M+HK+ + V P+
Sbjct: 12 RNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAQPKV-------------DAPV 58
Query: 341 KRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLV 502
++ FYP ++ ++ R K + ++ ++ GTV I+LAGR GKRVV +
Sbjct: 59 EKPAKFYPAED-VKKPLVNRRKPKPTK-LKASITPGTVLIILAGRFKGKRVVFL 110
>At1g63560.1 68414.m07185 receptor-like protein kinase-related
contains Pfam profile: PF01657 Domain of unknown
function DUF26; weak similarity to receptor-like protein
kinase 5 (GI:13506747) [Arabidopsis thaliana]
Length = 273
Score = 31.1 bits (67), Expect = 1.0
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +2
Query: 572 HSSALCDLHLHQNFTRATSTXQNTSMXITSXRIXSAXNVQSNPXXG 709
H + CD L NFT+ +S N ++S R S+ SN G
Sbjct: 6 HMATFCDDRLSDNFTQTSSYKANRETLLSSLRDRSSLGTYSNATIG 51
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +2
Query: 335 PLKRRKSFYPTQEKIRASSGGRPFS-KHVRR 424
P++RR+S P +E++ S GGR S H+++
Sbjct: 525 PVRRRRSLTPDEERVSLSQGGRHTSPSHIKQ 555
>At1g20540.1 68414.m02559 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to Rbap46 polypeptide (GI:9454362) [Gallus
gallus]
Length = 351
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +1
Query: 301 WR*EEWGNQNSTPQT*EV--LLPHSGENPCLIWWPS 402
W+ E Q ++PQ V L H G+ C++WWPS
Sbjct: 96 WQIPELYGQLNSPQLERVASLDAHVGKINCVLWWPS 131
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,469,458
Number of Sequences: 28952
Number of extensions: 299393
Number of successful extensions: 685
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2038669600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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