Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_P06
         (860 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0479 + 3606663-3607448                                           29   0.25 
09_02_0603 - 11150739-11150746,11150791-11151340                       29   6.3  

>07_01_0479 + 3606663-3607448
          Length = 261

 Score = 29.5 bits (63), Expect(2) = 0.25
 Identities = 14/42 (33%), Positives = 15/42 (35%)
 Frame = -2

Query: 505 GGPPFXKXXFXPPXLXGXPPXXXXEKFPPXXKXGXPPPXXXP 380
           G PP       P    G PP       PP  + G PPP   P
Sbjct: 211 GPPPMGPPQVRPGMPGGPPPGMRPGMPPPPFRPGMPPPPPGP 252



 Score = 22.6 bits (46), Expect(2) = 0.25
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -2

Query: 643 FXGGXPPPGGXF 608
           F GG PPP G F
Sbjct: 197 FPGGPPPPPGPF 208


>09_02_0603 - 11150739-11150746,11150791-11151340
          Length = 185

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 15/44 (34%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
 Frame = -1

Query: 500 PXXSXKXFXXPPPXGXPPXX*XGK-IPPXXKTGXXPPXXXPXFF 372
           P      F  PPP G PP    G    P  ++G  PP     FF
Sbjct: 28  PRLEKGNFALPPPFGFPPPPPPGSTFVPLPQSGVPPPPPLGSFF 71


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,963,683
Number of Sequences: 37544
Number of extensions: 247262
Number of successful extensions: 354
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 313
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)